Detail information of GWHGAAEX007723/evm.TU.scaffold_201.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|220919241|ref|YP_002494545.1| | 2.00E-26 | amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1] |
| KOG | KOG1237 | 0 | H+/oligopeptide symporter |
| nr | gi|695047358|ref|XP_009411558.1| | 0 | PREDICTED: protein NRT1/ PTR FAMILY 6.3-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q05085|PTR7_ARATH | 0 | Protein NRT1/ PTR FAMILY 6.3 |
| trEMBL | tr|A0A022PS27|A0A022PS27_ERYGU | 0 | Uncharacterized protein {ECO:0000313|EMBL:EYU18566.1} |
| TAIR | AT1G12110 | 0 | nitrate transporter 1.1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000208 | 1251213 | 1254563 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007723
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00854.20 | PTR2 | 101 | 528 | 3.30E-108 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006857 | Biological Process | oligopeptide transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.350 |
| SRR2545915 | Juvenile tuber | 2.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.650 |
| SRR5643514 | five period of Gastrodia elata | 7.540 | |
| SRR5643515 | five period of Gastrodia elata | 4.550 | |
| SRR5643524 | five period of Gastrodia elata | 5.390 | |
| SRR5643525 | five period of Gastrodia elata | 10.290 | |
| SRR5643528 | five period of Gastrodia elata | 4.650 | |
| SRR5643658 | five period of Gastrodia elata | 9.460 | |
| SRR5643659 | five period of Gastrodia elata | 4.500 | |
| SRR5643660 | five period of Gastrodia elata | 4.460 | |
| SRR5643661 | five period of Gastrodia elata | 4.870 | |
| SRR5643662 | five period of Gastrodia elata | 3.780 | |
| SRR5643663 | five period of Gastrodia elata | 7.900 | |
| SRR5643664 | five period of Gastrodia elata | 4.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.59 |
| Juven | Juvenile tuber | 0.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.61 | |
| Mother_Juven | Mother tuber of Juvenile | 1.00 |