Gene detail

Detail information of GWHGAAEX007747/evm.TU.scaffold_202.32

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4364	7.00E-157	Chromatin assembly factor-I
nr	gi\|743806963\|ref\|XP_010927904.1\|	0	PREDICTED: chromatin assembly factor 1 subunit FAS1 isoform X2 [Elaeis guineensis]
Swissprot	tr\|B2ZX90\|FAS1_ORYSJ	0	Chromatin assembly factor 1 subunit FSM
trEMBL	tr\|M0RTK6\|M0RTK6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P19260_001}
TAIR	AT1G65470	7.00E-157	chromatin assembly factor-1 (FASCIATA1) (FAS1)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000195	1412236	1431487	-

Transcript Sequence
>GWHTAAEX007747 AAATAATTTTAGCGCAATAACACAGCATCTTGGTATAGCAGCCTTCGCTTTTAATCGGACGGAAAACGCTCCGCTGCAGCGCATTTCAGCCGTCAGATTGTCCGTCAACAAATATATTATATATATTTTTATTGTTTCCGGATCTTTGCAACAGATGATGAAGGACCTCTAATTCAATGCCCTTTGTCTTTGGGGGACTTCCGAGGCTTTTGCCGATCAGAGATCTTCTTGCGAGAAGGAATCAGTTTACAGGCGTTTACAATCGGACTTGTGGCGAAGTGTTTTTGTAAGGTCAGGCCTTGTAATATACTGCGACGACCCCATTGCTTTGTTCCGAATGGCAGATCGATCCGTTGATAATGGGGCAGCAGAAGGTTCAGAAAGGCTGCAACTGCCTGGCAACAGTGATAGTGTTCCTGCTGTATCTTCTGCAACACTCGACCTAGATGTAAAAGGTACTTCAAATCATAGAACTCTGAAAAAAAGGAAAAGAGCTTGTGTGGATAGGACCGTCACCTATGAAGAAAAAATGGATTTTATTGAGGAATGCCAACGTGAGCTTGATGGACTGCTTCAATTCTACAAAGAAATGTCGTCCTCCAAGCTTCACATTGAAGAGGAACGTCTTACTACCTTAAATTCAGTGGTTGCATATATGCTGGAGGAGAGAAATCTTTCTTTCTCCGCACTGGTGAATGAAATCTATGGTAATATAAATGCAAAGGAGGGAAACCATGGCACCACTTTGGCCTCAATACGCAGTGCTGTGCTTTTTGTTGGTCAAAGAGTGATGTACGGCATAGCAGTTGAGGATGCTGATGTGCTGGAAGATGTATCTGAGAAGTGCCTTTGGTGTTGGGAGGCAAGAGATATGAAGCTTCTGCCCAAGGCTCAATGTGGTTTACTTAGTGTTCGTCGTATGGCTAGGAAAAAGATACATGAGAGGATTTCTGCACTTTCAACAACTATTTCGTCATTGTCAATGCGGTCTAATGAAACTCATGGAGGTGATCTAATTAGGGCATCGCAGAGGCTTCAAAAATCATTAAATTTGTCAGAAATATGTTCGTTAGTTGAAAAATTGAAGTTCAAGGTTAATGCGGAGATGGCTGAGAAAGAGGCCAAGCTGAAAGAAAAAGAATTGATCAAGGAACTTGAGAAAAATAAGAAGATCACTGAAACGGGGAGGAAGAGATTTGATCAGGAGATCCAGAAAGAGTTGCAGCAAACTGAAAAGGAGCAAAAGCGTCTCCGAGAAGAAGCTGCAGCAGAGGAAAAGCGTCTTGAAAAACAAAAAGCTGATCTTACAAAACAGCTTAAGAAGCAAGAAGTGCAAGCAAAAAGGGACCAACAGCTTCATGAGAGAAAAACAGCTGAATTGAAACAGCAGCTTAAAATACAAAAACAAGCAATAATTATGGAACGGTTTCTCAAGCGCACAAAAGTCAATGATTCTTTTGATTTGGCATTCTCAAAAGAGACGCTGATATCTGAAGCGCCTTGCAAAGTTGATAGTATTATTAACACAACAACATCCATGATGGATCATGTATTATTGCTGCATGAAAGCATAGCATTGGAGGATCTACGCAGAATGCATATTAGTAGATGGCACAAATGTCGTCATTCAAACGGATCCAGCAGATGGGGTATACGGTCCAAGCCCAAGGTTAACTTGTTCCATGGCTTAAAATTGCTAGGACCATCAACTGAAGCTGAAACTCTTGATAAGTTTTCATTTCCTGATAAAGATCTCACTAACAAGAAATTTAGATATTCAAGGGAAACTGTGCCAGACAAACAATTGGGAGAATGCCCCGACATTTTCACAAATTATAGCGATTGCCATGATAATGTCGAAAATGCCCCTGCCAATTGTTTGGTTAAAAAGCTTTTGCAGTTTGACAAGAGTAACAGGCCAGCATACTATGGTACATGGAGTAGGAAAAGTATTGTTGGGGCTCGAAACCCATTCAGGATAGATCCCAAGTTGGACTATGAAGTTGACAGTGATGAGGAATGGGAGGAGGAAGAACCAGGTGAAAACCTATCTGATTGTGAAAAGGACAAAGATGATGAGCTGTTAGATGAGGAAAATGTGGAGGGTAGTGATTGTGAAAGTGAAGATAGTTTCTTAGTGCCAGATGGATATCTCTCAGAAAATGAGGTGTTTCAAGCTGACAAAACATTAGATTCTATGGCTGAAGAGCCAAGAAACTTGGCATCTGCCAATATTGAACCTGAAAACGAAGAGATCAGAGTCTTTCTTCAACTACAAAAGTATCTCAACAATTTGACCGAACATGCTCTTCGGAAGTGCCATCCACTAATCATTACAAATCTGATGCATGAAAAATCAGCATCGCTAAATGCTGATTCTCTGGACGGGATAATGAAGCTGGAACAATCTTGCTTGCAGGTCCTATGCATGAGGGCTCTCCCCAGAGGTTCCATTATTGATACACCAAGTGCTGTTCTATCAGATAAAGATCAAAATCAGTATATTTCACAAACTAATAATATAAGCACTTCAGCCACTTTAGCTGTTATTCCAGATTCAGAATTGCCAGAATTTATCAGAGCAATCCAATCATCTCCACAGAGCATCAAAAAGGTCGTAGAATCATTGCAACTCAAGTTCTCAAGCATTTCTAAATCTCAAATAAAGAACAAAGTCAGGGAGATCTCAGATTATTCTGACCATCGTTGGAAGGTTAAAAGGGAGGTTTTGGATCGCTTTGGCTTATTCATCTCACCCAAGAAGAGCAACTATAACAAGGAGAAAGGCATTGCAAAGTTCTTTACGAAACGCTGCTTGCTGCCTAGAGAAGTGTCTCTAAAGTTTCCTGAATCCTCCTCTGAACAAACGGATAAGCAATTTATTAATGGCAACAATGATCAAAGTGCCACAGCATGATAACAATTCTGATGCTAAGAGCCCCTCCGCACTGTTGGAAGCATGCAACACTGACTGTCAGTTTTTGCAGTGTAACAAGTATTAAGAAGTCTAGTATATGTGAATAACAAAGTTTGTAGTAGTTTTGCTGTGTATCATATTACAAAGAACAGGTTGGTTGGTTGTGCTGATGTGTAATTTATCCAGTTGCATGGGGCTTTTGCTTGTAATTTGCTGTACTCGATTTGCACAATTTGGGGCTTATACATAATGGCAATTTAGATGTGATTCTAC

Network for GWHGAAEX007747

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12253.7	CAF1A	518	586	3.30E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.930
SRP064423	SRR2545915	Juvenile tuber	38.260
SRP108465	SRR5643513	five period of Gastrodia elata	18.380
	SRR5643514	five period of Gastrodia elata	19.740
	SRR5643515	five period of Gastrodia elata	17.250
	SRR5643524	five period of Gastrodia elata	19.480
	SRR5643525	five period of Gastrodia elata	8.420
	SRR5643528	five period of Gastrodia elata	8.800
	SRR5643658	five period of Gastrodia elata	7.370
	SRR5643659	five period of Gastrodia elata	19.750
	SRR5643660	five period of Gastrodia elata	18.390
	SRR5643661	five period of Gastrodia elata	19.950
	SRR5643662	five period of Gastrodia elata	14.360
	SRR5643663	five period of Gastrodia elata	16.500
	SRR5643664	five period of Gastrodia elata	14.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.110
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.770
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.520
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.750
SRP279888	Gastro	Gastrodia elata tuber	15.09
	Juven	Juvenile tuber	22.31
	Mother_Gastro	Mother tuber of Gastrodia elata	19.59
	Mother_Juven	Mother tuber of Juvenile	18.19