Gene detail

Detail information of GWHGAAEX007753/evm.TU.scaffold_203.5

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2147	1.00E-157	Nucleolar protein involved in 40S ribosome biogenesis
nr	gi\|743824869\|ref\|XP_010932890.1\|	0	PREDICTED: nucleolar protein 14 isoform X1 [Elaeis guineensis]
trEMBL	tr\|A0A067LDW1\|A0A067LDW1_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP45433.1}
TAIR	AT1G69070	1.00E-157	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000210	136402	168779	-

Transcript Sequence
>GWHTAAEX007753 CTGCTCATTATAAATTAATAAGCTTAATAAACCCTAATTCTTTCTGGTTACCAACAGCAGCTGCTATGGCGAAGACGAAGGACAAATCCACCGGCGGCATAAACAAGAAGAAAGGCCGGAAGAAACGTCAACTATCAGGACCCATGGTGGCTTCAATGAAAGCGTCGAAACTGTCTCGACCCAACCCTTTCGAGACGATTTGGTCGCGCCGCAAGCTCGACATCGTCGGGAAGAAGAAGGGCAAAGGAGAAGAGGTCCGAATTGGTCTGTCTCGAAACCTCGCCATCGAAAAGAGGAAGAAAACGTTGATGAAGGAGTATGAAGAGAGCACCAAGTCGGCTAAGTTCATCGATCGGAGGCTTGGAGAGAAGGATGATACTCTCCAGGAATTTGAGAAAGCTATTTTGCGTATGCAGCGTGAGCGCCAGTTAAAGGTAAAACGAGCAAGCAAATATAATCTGTCTGATGAGGATGATGATGATTCTACATTTCCTCAAGCACATATCATCCCAGCACTGGATGATTTTAATGATCATGTTCCACTTGAAGATGATGAAGAAGATGGGGATGCAGAATTACCAAGAAATTTGCATTTGCACCAATCGCTTGATTCTTTGAAAAGTGATTTACAGGATGAAACTGTAACGAAGCGAAAATCAAATAAACAAGTGTATGCAGAAGTAATGGCAAAGGATAAATATTTCAAGGCTAAAAGGGCAGAAGAAAGAGAAGAGATTGATCGTGAGATAACCACATTAAACAAATTGACAGACGAGTTGAATGAACGTCTGGTAGCTCTCATCGGTAGAGACTCAAAGCATTCTAATGAAAAACAATCTGATGATGTTTTTGACACATATTATAAAACCATCGGAGAATTGCATTTTGAGCCTAGAGCTCGCCCTTTAGATAGGACAAAGACCCAAGAAGAGATAGCTCTAGAGGAAAGAGAAGCTCTGGAGAAATTAGAGGAAGAACGCCTGAGCAGGATGCATGCTACTGATGAAGATGAAGATAATGATGGTACTGAAGATGTCCTAAAGTCATCTTCCAGAATGGATTGGAATGTTTCTGGTGATGATCTTGGAGATTCCTTTTCTATGATTAAAGATAGCGGAAATGAAAAGGGTTGGGTTGATGCCATATATGAAAGGGAAGAAAATGTAGATCAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGGTGATGATGATGCTGATGCTGATGCTGATGATGACACAACTTCTGAGGATTCAGTGAGTAATGATGAAGATCAGAATAGAACTGATGATGATAATACAAGTGATGGATGTGTAACCAAGAAATTAAAGCATAAGAATATGCCCTCAATCCATGATTGGGAACAAAGTAATGCTGATTACAATATTTGCTTAGGACAAGCACAGGTTCCGGATGGGAAAGGTGTAGCTAAATCTTGCGCTGATGATATTAAAACTGATTCTGTTAATTGTCACAAGGTAGTGGTTAATGAAACGCATGCTCACGTTCAGGAAGAGCTTCCTTTTGTTATTGAAGCTCCAAAATGTATAACAGAGATTTGTTCCTTGCTGGACAATCGTTCTGATATTGAAATAAAAGAGATCATCAAACGGATTCGTGCATATAACTCCATCAGTCTCGGAGCAGAGAACAGAAGGAAAATGCAGGTGTTCTATGGTGTTCTTTTAAATTATTTTGCAGTTTTATCTACTCGAAAACCTTTAAATATCAAGATAATTAATGCACTAGTTAAACCTCTAATTGAGATGGGAGCTGAAGTTCCATATTTTGCTTCTGTTTGTGCCAGACATCGATTAATACGGATACGAACACTATTTTCTGAGGATATCAAGATCCCAGGGAGTTGCTCTTGGCCTTCTTTAAAGACACTGAATTTATTCAGATTGTGGTCTCTTACATTTCCCTGCTCAGACTTCCGACATGTCATTATGACTCCTGTGATTCTCTTGATGTGTGAATATCTGATGCGTTGTCCAATCACTTCGGGCCGAGATATAGCCGTTGGATCTTTTTTGTGTTCTATGTTGCTTTCTGTTTTTAAACAATCTAAGAAATACTGTCCTGAGGTGATATGCTTTATTCATATGCTTCTAATGTCCAGTATGGAGAGGAACTCCAAAATCAATCAACTTTCACAGAGTCTTCTGGATTTAAAAGTTTCACAACCATGGCTTCATATCCAAGACGAAGCATGTACTGTGCACCAGATTGATTTGCTCGTGGTCTTGGAGATGGAGGATGACTCGCCTTATTTTATTTCTAATAATTTCAAAGCAAGCATGCTATTTCAAGTGATTAAAATTTTGACAGAATTCATTAATATGTATCAAAGTTTGAGCTCATTTCCAGAAGTATTCTCGCCAATTGAAGCCATGCTTCATGAAGTTCTGCAGAGTTCCAAACTTCCAGGGATTTTACGAACAAATATGGAAGAAGTTACTGGTTTAATAAGACAGAAATCAATCCAACACCAATTATCAAGGCAGCCACTCCAAATGAGAAAACAGAGGCCTGAGCCAATCAAGCTATTGAATCCAAAATTTGAGGAGAATTTTGTTAAAGGTATAGATTATGATCCCGACCGTGAAAGGGCCCAGAGGAAAAAGTTAAAGAAATTATTAAAGAAAGAAGCAAAAGGGGCTGTCCGTGAACTGCGAAAGGATAATCATTTCTTATTTGCGCTGAAAGAGAAAGAGAGATTGCTGCATGAGGAAGAAAGAGCTGAAAAATATGGTAAAGCACTGGCTTTCCTACAAGATCAGGAACATGCCTTCAAGTCAGGGCAACTGGGGAAAGGAAGAAAAAGGAGAAAATGA

Network for GWHGAAEX007753

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04147.11	Nop14	36	911	1.80E-211
PF03715.12	Noc2	660	824	9.70E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0032040	Cellular Component	small-subunit processome

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.780
SRP064423	SRR2545915	Juvenile tuber	38.850
SRP108465	SRR5643513	five period of Gastrodia elata	18.310
	SRR5643514	five period of Gastrodia elata	19.930
	SRR5643515	five period of Gastrodia elata	18.020
	SRR5643524	five period of Gastrodia elata	20.470
	SRR5643525	five period of Gastrodia elata	14.070
	SRR5643528	five period of Gastrodia elata	12.050
	SRR5643658	five period of Gastrodia elata	15.930
	SRR5643659	five period of Gastrodia elata	25.570
	SRR5643660	five period of Gastrodia elata	27.930
	SRR5643661	five period of Gastrodia elata	21.720
	SRR5643662	five period of Gastrodia elata	23.620
	SRR5643663	five period of Gastrodia elata	24.170
	SRR5643664	five period of Gastrodia elata	24.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.980
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.410
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.410
SRP279888	Gastro	Gastrodia elata tuber	29.42
	Juven	Juvenile tuber	28.73
	Mother_Gastro	Mother tuber of Gastrodia elata	15.18
	Mother_Juven	Mother tuber of Juvenile	23.46