Gene detail

Detail information of GWHGAAEX007755/evm.TU.scaffold_203.7

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672127718\|ref\|XP_008787331.1\|	0	PREDICTED: LOW QUALITY PROTEIN: protein FAR-RED IMPAIRED RESPONSE 1-like [Phoenix dactylifera]
Swissprot	tr\|Q9SZL8\|FRS5_ARATH	1.00E-97	Protein FAR1-RELATED SEQUENCE 5
trEMBL	tr\|J3LTC4\|J3LTC4_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB03G43000.1}
TAIR	AT4G38180	5.00E-97	FAR1-related sequence 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000210	221663	242309	+

Transcript Sequence
>GWHTAAEX007755 ATTTGTGCTCCTCCGAAATTGCGAAGTAGGGAATATCACAATCGGAATGTGGTCCGTTTCTCTTTGGTTTCAAGGGGAACCCCAGGTTTTCTCTCCTCCCATCTCCTTTCCATTTCCAATTTCCTCTACATGTAGTCATCCTTTCTCCATTTCCAATATCGCATGGTTCGCATATCCAAAACATCGGGAGTTTCTTTCAGGAATCAAGAAAAAACGGATGAATCCGTGCGGATGGAGGTCAAGGGCGAAGAGGCCCAAGTGCCTCCGGAGAGAGCTGCGCTCGGGCAATCTCCTGACGAACAAACTCTGGGAGCAGCGCAGATGAAGCAGAGGGTTGAATGCGGAGGACAAGCCGAAATGGCTGGGGGAGGCCGGTGCAAGGTCATGATGGAGGTCGTCCTCAAGGAGAACGGGAAATGGCTGATTTCTAAGCTGGAGACTGAGCATAATCACTCACTGTCTGCTCCTACTTCCGAAGAAGGCAGCACTAATGTGCCAATTTCCGTCGGAACGGAGTTCGACTCTGTTGAGGCTGCCAGGACCTTTTACTACGGATATGGTTGCAAATTAGGGTTTCGAACTCGGACTGGGTCGAACCGGCGGTCGGCGGCTACGGGGGATCTCATCATGCAGAGGTTCTTGTGCTGGAGAGGTAACTATCCTTTGCGGAGAAGGAACTTGGAGACATGCAATGGAAAAAATAAGCGGGAGATTTTCAAGAAGAGAAGCAAGCTGCTGGATAATGAAGAGGAGAGGAAAGAGTGTGATGGGGATGTGGTTGAGGTTTTTGACGTCAACCGCTCGGTTGAGAGGGCAGGTGTGGCTGAAGATTGTTTTGGGACTGATGATGAGAGCATGCTTTCTGTGAAAAGTTCAGTAGGTGATGATTGCGGAGTTGAGATAGAAAACAGGACTTTAGGGAGAGGCACAATTTCATCCGAGGTCACAAGGGCACCCGCTGCAAAGCCACCTGTAACATCGGTTTCTGCAAAGTCTAAGCTTTTGAGGGATCTTGGCGTGAGAGTATATAGATATTCATCTGATGAGAAGAGAGACATAATTCTAAGATACTTGATGAAGAAAAGCAACCGACAATCGGGGGAAAGAACCATAAAGTTTTTTACGACGCAAGCTCCTCCTGCTGAAAATTTCCGGCAGCAACAAAATAGTCAGCTTCAGCAAAATATCCAGCAACAACAAGAAGCTGTGGGAAAGTTAAATGGTTGGGTGCCACTACAGGATAAAGTTGTAGCAAGAAAACCTAAACAACTGAGACGAGAGATATCCGGTGTAGTAGAAGAACCAAAAATGGGCATGTTTTTTGCAAATGAAGACAGGGCATATGAGTTTTATGTAAGATATGCTGGAAATGTCGGTTTCTGTGTTCGAAAAGGATGGTGGGATAAAACTGCTAGAAGTGTTACCCGTTCAAGGGTTTTTGTGTGTTCAAAAGAAGGATTTCGGCCTAAATTTTTTGCAAATGAGGCCAAAAAAGCGAGGCCTGAAACTAGAACAGGCTGTCCTGCCCGTATGGCAATTAATCTTATGTCTAATGGTAAATATAGTGTGAGTGAGTTTGTCTCAGAGCATAATCATGAACTAGCAAATTCATTAGATATTCAAATGATTAGGCCACAAAAGTTATCTAAAGTGCATGTTAATCATTTTAGAACCAAACTGGTACCTGCTGAATACAAAAATTATTTAAGGATAAAGCAAACTGAGCGCATGCAGATGGGAGATGCAGGAGCCCTGCTTGAATACTTGCAGAGAATGAAAACTGAAAATCAGTCTTTTTTGTATGCCATTCAAGTTGATAAAGATGATCATTTGACAAACATGTTATGGGCAGATATTAATTCAATCATGGACTATGACTACTTTGGCGATGTTGTATGTTTTGACACATCCTATAAAGACGCTGGCTTTGGAAAGCCATTTGTTCAGTTTATCGGTGTTAATCATCATAAGCAAACTGTTTTATTTGCTGCTGCAGTAGTATATGCTGAAACTGTGGAATCTTTCAAATGGTTGTTTGGGACATTCAAAGAAATAATGGGTGGTAGGCAACCTAAGACAATTTTAACTGGACAGAGTTCCTTAATGAGTAATGCCGTTGCTGCTGTATTTCCTGGCACAATTCACCGCTATTGTGTGTGGCATATTTATCAAAGTGCTTTAAAGAACTTAACTAAGGCCTCTCTAAGTTTGGAAACCTTTTCACTTGATTTTAGCCAGTGCATCTTTGAGTTACATGAGGAGGAAGATTTCTTAACTGCATGGTCTTCTATGTTAGAAAGATACGAGTTAAATGATGATGAATGGTTAGCCAAGTTATATGAAGAGCGGAAGCATTGGGCTTTGCCTTATGCAAACGGTGCATTCTATGCAGACATCTTGAACACGCTACGAAGAGAAGGCTTAAATAGTTTGCTTCAAGAATATTTGAGACCCGAAATAAACATCCTACATTTTGTCAATAAATATGCAGAGTTTGTGAAAGAACGGAGATACATGGAACGAGAAACCGATTATCTAACCAATCAAATCCCAGCTAGAGCACCTACACTGAGATTCTTGTGGCAAGCTGCAAATACATACACACTTGCAGCTTTTGAGATGTTTAAAATGGAGTTCGAGCTAATTTCCAATTGCCTTGTTTACAGCTGTGGTGAGGTGGGAAGCATATCAGAATATGAGGTTGCCGTTAAGGACAGATCTAAGCTGTACTTTGTTAGGTTTGATATATCAGATGGTTCTGTTTTTTGTAGCTGCCAGAAGTTCGAGTTTGCTGGGATTCTATGCTGCCATGCTTTGAGAGTGCTCGATTGCAGGAATGTTAAAGAGCTTGCATCACAATATTTGTTAAAGCGATGGAGAAAGGACGCAAAATCTAGGCTTGTTAAGGAAGATGACGAATTTTTACTCCAGAATGCCCCCAAATCTTCATCCCTACAACAGCGTTATAACTCATTGTGCCGTTTGCTGTATAAGCTTGCAGCAAGAGCAGTGGAGAATGCTCATTCATGCTCATTTTTTGAGAACCAGTGTGGTAAGATTGCTGAACAGGTTGAGCGAATGCTGCAAGCAAAACTTCTTGAGAGAACCTCAATGAATGTGCTTATGAAAGGCCAATCACTGTGTCAGCTACAACGTGAGCATATAGATAATGAAAATAACGGTGAATCCAAGAATCTAAGGGGGAAAAGGAAAAAGGACACTGCAGCTTGCCGTAGACAACAAAAAAAATCTGATACCGTAGAAGTTTCAATGAATGCTAGAGATCCACTAGCAGCAGCACTGACATCTAATGAGATCCCTACCCATGCTAAGAATTCTTCAAATCAATTCTTTCTCTCGAGTCAATCGGTTCAGGGGGCATATATTCCTGGCCATCAATTTGGGCTGGGTTCCTTTCAAGGTTTTCACGGAACGCCTCAGTTTACTCAGGAATTTTCAGCTCCTGTGATGCAGCAGCAGCCATTTCCTGGGGAAGCTCATTTAAATCAGGCTTCTGAGATGCATGCTCTTCAATTTGTTGCAAGCAGTTCCCAGCTGGAACCCCAGGGAGGTGACCAAGGCCATTACAGCATTCCAGTTTGGGATTTTTTATGACCCGAGCATTTCTAAAGAAATCTAGTAGTATATGTGAACATACATAGTGGCAGCTTCAAATGGTGGCTCTATGCCTGGCTTGGTACATGAAGGTGCTCCATTGGTTTCAATTTTTTCTTAACAAATGGAAATGAGTGCAAGCTGCAGATTCGGGATTGTTCTTCACCCTATAGCTTAAGCGTTGTGCCAACTGAAGCTTTGTACCACCGGCCACTTCTCAGCATGAGAACGGAGACACTGTATGTTCATTGTCTTACCATTTATTGTACATATATATATATATATATATATATATATATTTGAAAAGTTGAACCTCATAAGACAAATATATAGTGCGTAATATTTGAACCAATGATTTGTTAAGAGTTCAATTCCTAGAGCTGAAAAGCCACGACATTATTCACTCAGATACTTGCTTATGACTCGATAGAGACATGTTGTAACTTGAGCTAGCGTGTTTAGCTTAATAGTGAATAAACAAAGCATGAACAATATTCTTTTGGCTTCTTTCGAGGAAGGCTATGCTCATTCCTTCATTACCTGTTCATGCTAAGGATGACTCAAATAGCCTTTTTTAAACGCACACTGTTCTTCATTGTTGTATATTGCCTCACCACAAAGTATCATCTTGTTGTAGGCATTTTCAAGCGGTTTTTATTATTATTGTGGATATTAATTTTTC

Network for GWHGAAEX007755

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03101.14	FAR1	71	99	2.20E-05
PF03101.14	FAR1	395	481	6.00E-22
PF10551.8	MULE	577	670	1.50E-24
PF04434.16	SWIM	862	891	3.20E-06

Protein Sequence

>GWHPAAEX007755
MVRISKTSGVSFRNQEKTDESVRMEVKGEEAQVPPERAALGQSPDEQTLGAAQMKQRVECGGQAEMAGGGRCKVMMEVVLKENGKWLISKLETEHNHSLSAPTSEEGSTNVPISVGTEFDSVEAARTFYYGYGCKLGFRTRTGSNRRSAATGDLIMQRFLCWRGNYPLRRRNLETCNGKNKREIFKKRSKLLDNEEERKECDGDVVEVFDVNRSVERAGVAEDCFGTDDESMLSVKSSVGDDCGVEIENRTLGRGTISSEVTRAPAAKPPVTSVSAKSKLLRDLGVRVYRYSSDEKRDIILRYLMKKSNRQSGERTIKFFTTQAPPAENFRQQQNSQLQQNIQQQQEAVGKLNGWVPLQDKVVARKPKQLRREISGVVEEPKMGMFFANEDRAYEFYVRYAGNVGFCVRKGWWDKTARSVTRSRVFVCSKEGFRPKFFANEAKKARPETRTGCPARMAINLMSNGKYSVSEFVSEHNHELANSLDIQMIRPQKLSKVHVNHFRTKLVPAEYKNYLRIKQTERMQMGDAGALLEYLQRMKTENQSFLYAIQVDKDDHLTNMLWADINSIMDYDYFGDVVCFDTSYKDAGFGKPFVQFIGVNHHKQTVLFAAAVVYAETVESFKWLFGTFKEIMGGRQPKTILTGQSSLMSNAVAAVFPGTIHRYCVWHIYQSALKNLTKASLSLETFSLDFSQCIFELHEEEDFLTAWSSMLERYELNDDEWLAKLYEERKHWALPYANGAFYADILNTLRREGLNSLLQEYLRPEINILHFVNKYAEFVKERRYMERETDYLTNQIPARAPTLRFLWQAANTYTLAAFEMFKMEFELISNCLVYSCGEVGSISEYEVAVKDRSKLYFVRFDISDGSVFCSCQKFEFAGILCCHALRVLDCRNVKELASQYLLKRWRKDAKSRLVKEDDEFLLQNAPKSSSLQQRYNSLCRLLYKLAARAVENAHSCSFFENQCGKIAEQVERMLQAKLLERTSMNVLMKGQSLCQLQREHIDNENNGESKNLRGKRKKDTAACRRQQKKSDTVEVSMNARDPLAAALTSNEIPTHAKNSSNQFFLSSQSVQGAYIPGHQFGLGSFQGFHGTPQFTQEFSAPVMQQQPFPGEAHLNQASEMHALQFVASSSQLEPQGGDQGHYSIPVWDFL

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	43.520
SRP064423	SRR2545915	Juvenile tuber	39.690
SRP108465	SRR5643513	five period of Gastrodia elata	24.180
	SRR5643514	five period of Gastrodia elata	24.520
	SRR5643515	five period of Gastrodia elata	22.220
	SRR5643524	five period of Gastrodia elata	23.580
	SRR5643525	five period of Gastrodia elata	31.100
	SRR5643528	five period of Gastrodia elata	27.040
	SRR5643658	five period of Gastrodia elata	25.940
	SRR5643659	five period of Gastrodia elata	33.000
	SRR5643660	five period of Gastrodia elata	32.370
	SRR5643661	five period of Gastrodia elata	28.570
	SRR5643662	five period of Gastrodia elata	30.830
	SRR5643663	five period of Gastrodia elata	33.630
	SRR5643664	five period of Gastrodia elata	32.890
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.960
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	33.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.060
SRP279888	Gastro	Gastrodia elata tuber	31.49
	Juven	Juvenile tuber	31.85
	Mother_Gastro	Mother tuber of Gastrodia elata	19.74
	Mother_Juven	Mother tuber of Juvenile	22.96