Detail information of GWHGAAEX007756/evm.TU.scaffold_203.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|312137265|ref|YP_004004602.1| | 2.00E-57 | n(2),n(2)-dimethylguanosine tRNA methyltransferase [Methanothermus fervidus DSM 2088] |
| KOG | KOG1253 | 0 | tRNA methyltransferase |
| nr | gi|743760622|ref|XP_010937961.1| | 0 | PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 [Elaeis guineensis] |
| Swissprot | tr|Q9LFU5|TRM1_ARATH | 0 | Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 |
| trEMBL | tr|M5XAZ0|M5XAZ0_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ16225.1} |
| TAIR | AT3G02320 | 0 | N2,N2-dimethylguanosine tRNA methyltransferase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000210 | 246928 | 267372 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007756
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02005.15 | TRM | 12 | 477 | 4.10E-117 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008033 | Biological Process | tRNA processing |
| GO:0004809 | Molecular Function | tRNA (guanine-N2-)-methyltransferase activity |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 85.080 |
| SRR2545915 | Juvenile tuber | 74.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.490 |
| SRR5643514 | five period of Gastrodia elata | 22.380 | |
| SRR5643515 | five period of Gastrodia elata | 19.330 | |
| SRR5643524 | five period of Gastrodia elata | 20.550 | |
| SRR5643525 | five period of Gastrodia elata | 6.740 | |
| SRR5643528 | five period of Gastrodia elata | 6.910 | |
| SRR5643658 | five period of Gastrodia elata | 6.310 | |
| SRR5643659 | five period of Gastrodia elata | 29.150 | |
| SRR5643660 | five period of Gastrodia elata | 32.090 | |
| SRR5643661 | five period of Gastrodia elata | 27.780 | |
| SRR5643662 | five period of Gastrodia elata | 30.190 | |
| SRR5643663 | five period of Gastrodia elata | 28.070 | |
| SRR5643664 | five period of Gastrodia elata | 35.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 50.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 59.130 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 59.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 66.500 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 54.980 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 57.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 40.82 |
| Juven | Juvenile tuber | 53.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.80 | |
| Mother_Juven | Mother tuber of Juvenile | 25.67 |