Detail information of GWHGAAEX007757/evm.TU.scaffold_203.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|146304485|ref|YP_001191801.1|3.00E-57C/D box methylation guide ribonucleoprotein complex aNOP56 subunit [Metallosphaera sedula DSM 5348]
KOGKOG25720Ribosome biogenesis protein - Nop58p/Nop5p
nrgi|695071014|ref|XP_009382561.1|0PREDICTED: probable nucleolar protein 5-2 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9MAB3|NOP5B_ARATH0Probable nucleolar protein 5-2
trEMBLtr|M0RPQ9|M0RPQ9_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P05790_001}
TAIRAT3G050600NOP56-like pre RNA processing ribonucleoprotein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000210286632296816+
Transcript Sequence

Network for GWHGAAEX007757

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08156.12NOP5NT2669.90E-21
PF01798.17Nop1663948.70E-85
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14565NOP58 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.760
SRR2545915Juvenile tuber9.880
SRP108465SRR5643513five period of Gastrodia elata17.290
SRR5643514five period of Gastrodia elata15.450
SRR5643515five period of Gastrodia elata14.780
SRR5643524five period of Gastrodia elata14.570
SRR5643525five period of Gastrodia elata11.550
SRR5643528five period of Gastrodia elata10.930
SRR5643658five period of Gastrodia elata9.070
SRR5643659five period of Gastrodia elata18.490
SRR5643660five period of Gastrodia elata15.340
SRR5643661five period of Gastrodia elata18.270
SRR5643662five period of Gastrodia elata14.420
SRR5643663five period of Gastrodia elata15.340
SRR5643664five period of Gastrodia elata14.080
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.800
SRR6049655Rhizomagastrodiae_C368-T10_good_112.460
SRR6049656Rhizomagastrodiae_C368-T07_good_113.740
SRR6049657Rhizomagastrodiae_C368-T07_good_16.710
SRR6049658Rhizomagastrodiae_C368-T04_good_115.970
SRR6049659Rhizomagastrodiae_C368-T04_good_111.520
SRR6049660Rhizomagastrodiae_C368-T01_good_111.330
SRR6049661Rhizomagastrodiae_C368-T04_good_113.300
SRR6049662Rhizomagastrodiae_C368-T01_good_16.890
SRR6049663Rhizomagastrodiae_C368-T01_good_115.390
SRR6049664Rhizomagastrodiae_C368-T10_good_113.020
SRR6049665Rhizomagastrodiae_C368-T10_good_113.020
SRP279888GastroGastrodia elata tuber 11.89
JuvenJuvenile tuber9.30
Mother_GastroMother tuber of Gastrodia elata 7.63
Mother_JuvenMother tuber of Juvenile 5.51