Gene detail

Detail information of GWHGAAEX007758/evm.TU.scaffold_203.10

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|146304485\|ref\|YP_001191801.1\|	4.00E-57	C/D box methylation guide ribonucleoprotein complex aNOP56 subunit [Metallosphaera sedula DSM 5348]
KOG	KOG2572	0	Ribosome biogenesis protein - Nop58p/Nop5p
nr	gi\|695071014\|ref\|XP_009382561.1\|	0	PREDICTED: probable nucleolar protein 5-2 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9MAB3\|NOP5B_ARATH	0	Probable nucleolar protein 5-2
trEMBL	tr\|M0RPQ9\|M0RPQ9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P05790_001}
TAIR	AT3G05060	0	NOP56-like pre RNA processing ribonucleoprotein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000210	340136	354138	+

Transcript Sequence
>GWHTAAEX007758 CTGCCTCCAAAAGTTTGGTTGGAAGTCTTAAAGGGTAACAAAAACGATGTTGGTGCTGTTCGAAACTCCCGCTGGCTTTGCCCTCTTCAAAATATTAGATGAAGGAAAACTATCAAGAGTAGAGGATTTGTGGAAGGAGTTTTCTAGCTCTGAATCAGCCAGACAGGTTGTTAAGCTGAAAGCTTTCAGCAAGTTTGAAAATACAGCAGAAGCCCTGTCTGCAGCAACATTACTAATAGATGGCAAGCCAAGCAAAGGTCTTAGAAAGTTTTTGCGTACTCATTGTAAGGGAGAGACTCTTGGAGTTGGAGATTCCAAACTAGGAAATGCTATTAAAGAAAAACTGCAAATAGATTGCATCCACAACAATGCTGTAATGGAACTTATGAGGGGATTAAGAAATCAGTTATCAGAACTCATATCTGGCCTTGGCGTGCAAGATTTAGCTCCAATGAGCTTGGGCTTGTCACACAGCCTTTCTAGATACAAACTGAAGTTCAGCCCAGATAAGGTTGATACAATGATCATTCAAGCAATAGGCTTGTTGGATGATCTTGATAAAGAGCTAAATACTTATGCCATGAGAGTTCGTGAATGGTATGGTTGGCATTTCCCTGAGCTCTCTAAGATTGTGCAGGATAATATCCAATATGCTAAAGTAGTCAAGCTGATGGGAAATCGTGTAAATGCTGCGAACTTTGATTTCTCAGAGGCGCTATCAGAAGAAATTGAAGCAGAGTTAAAAGAAACAGCTCTTATATCTATGGGCACTGAAGTGAGTGATCTTGATCTGGCAAATATAAGAGAATTATGTGACCAAGTTTTGTCTCTTCAAGATTATAGAGCCCAGTTATATGATTATCTTAGAAGCAGGATGAATACTGTTGCTCCAAATTTGACAGCCCTTGTTGGGGAGCTCGTTGGGGCCCGCCTTATTGCTCATGGGGGCAGTTTATTGAATTTAGCAAAGCAGCCTGGGAGTACAGTTCAGATTCTAGGAGCAGAGAAGGCCTTGTTCAGAGCCCTTAAATCAAAACATGCAACACCAAAATATGGGTTGATTTTCCATGCATCCTTAATCGGTCAGGCAGCTCCAAAACTCAAGGGTAAAATCTCTCGCTCTCTTGCTGCTAAGGCTGCACTTGCCATCCGGTATGATGCCCTCGGTGACAGCCAAGATAACTCTATGGGCCTCGAGAACCGTGCAAAGCTTGAAGCCCGCCTACGAGTTCTCGAGGGAAGAGAAGTGGGCCGTTTTGCTGGCTCAGCAAAAGGTAAGCCTAAGATTGAGGCTTATGATAAAGACAGAAAGAAAGGCGGAGGGGCGTTGATCACTCTGGCAAAGACTTATAATCCATCATCTGATGCTGTGCTTGGGAAAACTAGTGAATCAAATGCGGAGAAGCCGGTAAATGAACAGGAACAAACACATAAGAAGAAGAGGAAATATGAGGCGGAAGAGTCGATCCCAGCTGAAGAGGTGGGAGGAGCTAGGGCTCAACATGATACCGAAGAAGACTTGAAGAAAAAGAAGAAGAGAAAGGCTGAGGCAGAGAACAATGTGGTGCAAAATGCAGATGCTGAGGAGCATGAAGATAATAAAAAGAAGAATGCTGCGCAAGTTGAGGATGAAAGTGCTGCAGCAGCTGAAAAGCAGAAGAAAAGGAAGAAAAAGAAGAAATCAGAGGCCGAGCTGGAGAATGATGATCAGAAAATGGAACAGGTTGCTGAGGAATCCCAACACAAGGAGAAGAAGAAGAATAGAAAGCACTCTGAAGGGGCGGAAGAAGCTATCAAAGAAAATGAGGAGCAAGGAGAAACAGTAAAGGCTGTCAAGAAAAAGGACAAGAAAAATAAAGAGAAGCTACATCCTGAAATACAGGAAGAAGCTAAAGATGAAGATGAGGTGCAAGGAAACATTGAGAAGGTTGGCAAGAAAAAGGACAAGAAGAAAAAAGAGAAGCACTGAGATTGAGTATGTAGAGCTTTGAGGCGATGATGATCTTGGACTAATTTTGTTCTGTTAGAGACTGGTTGCAGGATATGTATGTTTAGCAGTAATTTATTCTTAGCTTTTCTTCCATTTACAGAATTGGCTGTTCGATTATGCGCTGAACAAAAGCTTAGTTATTTATTTGTTTGTGCTTTGCTTATGAATGCTGCTGCAGAGACGTGCTTTCAACTTAGTTTCTTAAGTTCTGTTTATGTAGGATTAGCTCAAGTGCATGATTAATGCATGGAGTACAGAATTAAATTACTGATGGTAGAGCAACTCCTCACCACATTAACACAAATGAGTCATTGAACCTCTATTTGAGCATATATTTAGTTCATTTATTTAAATGTTTTTGCACATTTTGAGCGCACTACCGTACTAAAA

Network for GWHGAAEX007758

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08156.12	NOP5NT	2	66	1.40E-20
PF01798.17	Nop	166	394	8.80E-85

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14565	NOP58	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.050
SRP064423	SRR2545915	Juvenile tuber	32.080
SRP108465	SRR5643513	five period of Gastrodia elata	40.140
	SRR5643514	five period of Gastrodia elata	36.510
	SRR5643515	five period of Gastrodia elata	34.470
	SRR5643524	five period of Gastrodia elata	36.120
	SRR5643525	five period of Gastrodia elata	19.460
	SRR5643528	five period of Gastrodia elata	15.930
	SRR5643658	five period of Gastrodia elata	13.220
	SRR5643659	five period of Gastrodia elata	53.310
	SRR5643660	five period of Gastrodia elata	42.630
	SRR5643661	five period of Gastrodia elata	52.830
	SRR5643662	five period of Gastrodia elata	44.790
	SRR5643663	five period of Gastrodia elata	44.170
	SRR5643664	five period of Gastrodia elata	50.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.230
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.740
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.770
SRP279888	Gastro	Gastrodia elata tuber	30.24
	Juven	Juvenile tuber	23.89
	Mother_Gastro	Mother tuber of Gastrodia elata	16.85
	Mother_Juven	Mother tuber of Juvenile	14.67