Detail information of GWHGAAEX007767/evm.TU.scaffold_203.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|386714222|ref|YP_006180545.1| | 1.00E-70 | MFS-type transporter [Halobacillus halophilus DSM 2266] |
| KOG | KOG0254 | 0 | Predicted transporter (major facilitator superfamily) |
| nr | gi|672184756|ref|XP_008812644.1| | 0 | PREDICTED: sugar carrier protein C-like [Phoenix dactylifera] |
| Swissprot | tr|Q41144|STC_RICCO | 0 | Sugar carrier protein C |
| trEMBL | tr|M0U362|M0U362_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P24550_001} |
| TAIR | AT1G11260 | 0 | sugar transporter 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000210 | 606453 | 609691 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007767
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 28 | 490 | 7.10E-130 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 75.790 |
| SRR2545915 | Juvenile tuber | 74.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 232.110 |
| SRR5643514 | five period of Gastrodia elata | 132.290 | |
| SRR5643515 | five period of Gastrodia elata | 301.240 | |
| SRR5643524 | five period of Gastrodia elata | 229.670 | |
| SRR5643525 | five period of Gastrodia elata | 117.340 | |
| SRR5643528 | five period of Gastrodia elata | 313.160 | |
| SRR5643658 | five period of Gastrodia elata | 128.610 | |
| SRR5643659 | five period of Gastrodia elata | 135.140 | |
| SRR5643660 | five period of Gastrodia elata | 98.600 | |
| SRR5643661 | five period of Gastrodia elata | 147.430 | |
| SRR5643662 | five period of Gastrodia elata | 134.310 | |
| SRR5643663 | five period of Gastrodia elata | 98.200 | |
| SRR5643664 | five period of Gastrodia elata | 114.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 124.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 73.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 109.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 102.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 72.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 76.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 93.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 86.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 87.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 93.350 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 158.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 158.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 80.88 |
| Juven | Juvenile tuber | 117.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 572.40 | |
| Mother_Juven | Mother tuber of Juvenile | 473.68 |