Gene detail

Detail information of GWHGAAEX007774/evm.TU.scaffold_203.33

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1020	Sister chromatid cohesion protein SCC2/Nipped-B
nr	gi\|672125116\|ref\|XP_008785967.1\|	PREDICTED: nipped-B-like protein B isoform X2 [Phoenix dactylifera]
trEMBL	tr\|M0SUS8\|M0SUS8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P01490_001}
TAIR	AT5G15540	PHD finger family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000210	1041883	1131577	-

Transcript Sequence
>GWHTAAEX007774 GCGCCATCTAATCAATTCCCAGATCAGGATCGAACGCTTAGGGTCGTCTTCCCCTTTTGACTCGACGCGTGCCCTAGCATTTCTGCTCGCGGCTGCTGCTTCCTTCGTGTGTCGATTTTCTTCTCACAGCTATCAACCGCTTCCATTAAACAATTAAAGCCCTTCTAGCTCAAAATCGGCAATCTCATCTTCTCTAATTCTCTCTAGAATTAACATTCGAAGGATTCGCTTTCCTGTTTGAGTCGATCAAATCCCAAAGTTTCTTGAATAGACCCAGATGATCAAAATAGTCTGATCAGCATCAACTCCGTGCCATCGGTCGTCTCTCCCGATATCCCGTAGTTGTTCACTGCCCTCACTTCAGCTCCAAAACTCATCTGCACCATTTTCAACTTTCTCCCGCTCTCCAGCCTTTTCCATAGCTCTTCGAAATCATCCAGATACTTTAAATCTAACCCTAATTTCCACTAGGCCTCGATTCCCTGTCCCTGTTTGTTCGCTGACGCTGCTTCTTGGCTTCCCTATAGATGGATTGCCACCAGGGCACTGGCTTCGAGAAATTCTGCCGCCTCTCTAATACCATCCACTCGGAGATCGCCCCGTCCCTTTCTCTTCCCTCGTTACCTGTGTATCTGGGTGCGGCGGATCCAGCTTTTGCACTGTTCGAGGATGTCTCTGGGCGTGGCATCGATGCCAATCGGTCGGAGATCTTAGCGCATTCTGATAGGATTGTGAACTTGCTCAGGGACTGTGATGTCAGCTATTTAAATTTAAAGGGGGAGAAGAATTCACCATGCAGCTGGGGCGAAGTGTCGAAGCTCTATGATGAGGTCATCACGCAGTATCCAACAGCGTTTGAGTGTTCTACTGCAGGTCCTTTCCAGGCAGAGCATCATCAACATGAGATATTAGAAAAGAAACCCTTATTGACAAATATATCTAGTACTGGTCATGGATATTATGAAAATGGGGCCACTTTGAGTAATTATATTGGTGGCAGCAATTTAGCTCAAGAGCAATTGATTTCTATTGATTCATGCAAACTTAAAGTTAAGAAGAAAGAAAGTGATCTGAATTCATTGTCATCAGGGCCGGGACCTCCTAATCTGGAAGATATGGTTGGTGCATTTTGTGAGATTTTGGAGGACTTCTGTGGGAAAGCAGAAGTTCCTGATGATATGGGAGGCGAGGGAGGACCATCAGTTCCTCTTGCTGACATCAAAAGTCTTATAAATGAGATAATATCTGCATCTGCGAAGAAAATTTTGCATTTGGTTTCTTCCGAGACACTTGTTAGAGTCATAAATGTTCTTGATCGAGAGATTCAATGTGGACAAGGTTTGTCTATAAACGATAATGAAAATTCTTCCACAGAAGCTTTACCAATAGTTTTGCATGCTCTAGAGTCCATTCATGCCATTCTTGTAATTATGACCAAGCAAGACATGCCAAAGCAGCTATACAAAGAGGAGATAATTGAACGGATTGTGGATTTTTCAAGATATCAAATCATGGAGGTCATTTCTGCTTACAATCCATTTTACTCTACCCCACAAGAACAAAATGAAAATGCTGAATTTGACTACGATGAGGGAGATGATGAGGATATTGATAATGGCTCAGTAGGCAGAAAACGACGTAACGTCCGTTCTGCATATGCCAAAAGATCTACTGTAAACAAGATATCTTCAGGTGTTTATTCCGTAGCTCAAAAGCTATGCTCTATATTAGATTTTATTAAGGATCTCCTGTCAGTTGTACGGCTATCAGATAGCTGTATTTTTCAGCTATTGAAAGCAAGTGTTTCTACTTTCTTGGTTGACAATATACAGCTCTTGCAGTTGAAGTCTATCAATTTACTCTGTGGGGTCTTTTCATCATATCCTGAACAAAGAGATTTTTTGTTAGATGAGATACTTCATCTCTTTCCAAAATTGCAATTTTCAAAGCGTTCTCTCAGGGCCTACCACCTACCAGATGAGGAACAGAAGCAAATTCAGATGGTGACCGCATTGTTGATTCAGTTGGCACAATTTGGTGCCAACCTTCCTGAAGCCACAAAAACAACATCAACTATGGATGCCGTTTCAAATTCTTCAGTTGATGTAGCATGCCCCTCTAAGTGTCGTGATGTTGCACAGATGGTGTCAATTGCTTTATGGACCAAAGTTGTTGAAAGGTGCACCAATACTAAGGCTCAGGATTTATCGGATTCAAAAACAATTTTGGAAAACCTTGTCACAGACCTGTTGACGACCTTGAATTTGCCGGAGTATCCTGCTTCAGCTTATATATTACAGGTTCTTTGTGTTGTACTACTCCAAAATGCTGGGCTCAAGTCAAAAGACATATCAGCACGTTGCATGGCAGTTGATGTTCTTGGAACAATTGCTGCCAGACTAAAACATGATTCTGCAATTTACAGAAGTGAGAGCTTGTGGATTTTGCAGGAGTTGGCTGAGGGGGAATCTGAGGCATGTAGTAAAGTAAAAGATTCATGTTGTGTTTGTTTTAGTGGAAAAGGTGTCAACACATGTTGCCAAGTTTGTCATAGATGGTTTCATGAGGATTGCTTAGGAATTTCAGGACACGAAAAGTTGGCTCTTGATTGGTCATGCCATGTTTGTTTTTGCAAAAGACAGCTTAGTGCCGTACAATCATACAGCAACCCCCAAAGTAAAGAAACTGTTAATACTACTAAAGGTGCTGCAAAAAATTCTTCCAAAGAACCTGAGTTGATTACAAAACTTGAGATCCTTCAGCAAATTCTTCTGAATTATCTTGAGGAAACTGGCCAAAAAGATGATGCAAATATACTTACTCGCTGGTTTTATCTATCCCTATGGCATAAGGACAACCCTGTAAACCCAGAAAAGGTTGTTTACCTTATTGCTCGATTAAAATCTAAAGCAATTTTTCAGGGATCCGAGGGTACATTTCCTTTGCCAAGAGATTGGGCTAAAAAGATATGCTTAGCTTTGGGTCAAAACCTTTCTCTTTCTAGAGGTTTTGATAAAATTCTTACACATCTTCTCGCAAGTTTAAGGGAAGGCTCGTCTATTCTGAGAGCAAAAGCATTACGTGCGGTTAGCTCTATAGTTGAAGCTCATCCTGAAGTTTTATGCGATGAACGAGTGCAAACTGCAGTTGAGGGAAGATTTTGCGATTCTGCAATTTCTGTTCGCGAGGCAGCCCTTGAACTTGTTGGTAGGTATATTGCATCTCATCCTGAGGTGGGCTTGAAGTATTTTGAAAAGGTTTCTGAACGTATAAAGGACACCGGGGTAAGTGTGCGCAAACGTTCTATCAAAATTATCAGGGAACTATGCACTTCAAATACCAGTTTTTCAGAAGCAACAAATGCTTTTATTGAGATGATTTCTCGTATTACTGATGAGGAAGCAAGTGTGCAAGATCTAGTTTGCAAAACCTTCTATGAGTTGTGGTTTGAAGAGCCTGCTGAATGGCAGACCGAATTTGTTGGTGATGGTAGCTCAGTTCCTGTTGAAGTTGCAATGAAAACTGAGCAAATTGTTGATATGCTAAGGAAGATGCCTAATCATCATTTTCTTGTTACTTTAATCAAGCGCAATTTAGCACTTGATTTCCTTCCTCAGTCAACTAAATCTGCAGGGATAAATGCCGTTTCTTTAGCATCTGTACGCAAGCGCTGTGAACTGATTTGTAAGAGATTATTGGAAAGAATCTTACAGGTTGAGGAAGGAAATATCGATGAGGAGGAGGTCTGTGCACTTCCGTATGTTTTAGCACTGCAATCATTTTGTCTAGTGGATCCAATGCTTTGTGCACCAGCTACTGGACCATCACAGTTTGTTGTAACCCTTCAATCATATCTCAAGAACCAGGTGAACAGTAAATCGATTGCACGGTTGCTTGAAAGCATTATCTCTATTATTGATGCTGTACTACCATTGCTTCGGAAGCCACCACAAAGTATTATTGAGGAACTTGTACAAGATTTGAAACACATGATACTTCGGCACAATTACTTGACCGTTGTACATGCATGTATCAAGTGCCTTTGTTCCCTTAGTAGGATGTCTGAGAAAGGTGCAAGCTTAGTGGAGTATTTGTTTCAGATTTTCTTCAGACATTTGTGTAATCCCAATTTTGATAACAAGCAGGGATTGGAGCGTTCTCTCTTTTGTCTTGGAATTCTTCTTAGATATGGCAATGAATTCATGATCAGTAGCAATGATCAGCCTAATATTGTCCAAGGTCTCAGGCTTCTTAAAAAGTACCTTCTTCTTGAAGATTTTGGTTTGAAAGTTCGAGCTTTGCAGGCAATAGGTTATGCCTTAATCGCTGAACCTGAGCATATGTTGAAGGAAGATATTGGAAAAATTTTAGAAGGTTCATTAGCATCTGATGTTGATCCTAGAATCAAGATGCAAGCTGTTCAAAACCTATTTGAATATCTTCTTGATGCTGAAAGTCAACTTGGGAGTGATTGCATGGCCAAGTCCCAAACTCGAGGCACTGAACATGCAAAGAATAGTGTTCCAGTGGCTGCTGGTGCTGGTGACACGAACATTTGTGGAGGAATCATTCAGTTGTACTGGAGCCTTATCTTAGAAAAATGTTTGGATGTAATTGACCATGTTCGTGAATCTGCTCTTAAGATTGTTGAAATTGTACTTCGTCAAGGTCTAGTTCATCCAATGACATGCGTTCCTTGTCTTATAGCCTTGGAGAGTGATCCGCTAGAGATGAACTCCAAGTTGGCTCATAAGTTGCTTATGAATATGAATGAAAAGTATCCTTCATTTTTTGAGTGCCGTTTAGGTGATGGACTACAGTTGTCATTTAAATTTATTCAATCCATAGCTAAGAATGTGGCATCAAATAATGCAAGAGGGAAATTTGATGTTGTTGCTATTGCTCACATCAGGCAAGGGATATCAAGAATATATAGGCTTATCCGAGGAAACCGTATTTCAAGGAATAAATTTATGCATTCAATTGTGAGGAAGTTTGAGTCTGGATACGGAAATATCCCATCAATCTCATTTCTCCTTTATTGTACAGAAATTCTTGCAACTCTCCCATTTACATCTCCAGATGAACCTCTTTATTTGATTTATGATATTAACCGGGTAATTCAATTAAGAGCTGGGGCAGTTGAAGCGAACATGAAAATGTGGAGTTCCTTTGCTCAGCATAGTGGTTCTATTAAAGTCCCTAATGTAAGCAATGATCTAAATGAAGACTCTGAAGAGCATAATATCTCTAATCAACATCTTGAATCAGCCATGGAAAACACTAGTGCCCCCACTGCTGAAACTCTGCAAAAGTTTCAGGTTGATTGGCTGGATTCGACAGCTCTGCAGTTACTTTTAAAGCTTAAAAGGCACTTAAAAATTATGTATGGACTTAACGATGCCAGGTGTCAGGCTTTCTCTTTGAAGGAGCACCCAAAAGTCGGTGAGTCTCTCTCTAGGCAAAACATTGCATTCAGCGCTAGTGATGTTTCTACCAGTTCTCCCACAAACTATGGAGACATGGTTCAGAAGTACCAGGAACTGAAGGCAGCATTGAAGGAAGATACAATGGATTATGCCACATATGCATCTAGTGTAAAAAGGAAGCGCGCCCCTGCCCCAACCCCAGCCCCAGCCCCAGCCCCAACCCTATCACCAGCCCAAGCCCCAGGCCCAACCCTCTCACCAGCTCCAAGAAGCACCAGAAAAGCTGCCCAGAGAAGAGCTGCACACAATAAGGGAGAACAAGAAGAAGATGATGATGATGATGAAGATGATGATAATGATGATGATGATGATATCAGTGATGAAGAATGGACCGGTGGCCCCCGGAAACTCGACTTCAGCAGCGTCAATGGCAGCGTGGGTAGAGTGACCAGGCAGCGGGCTTTGATGTGTAGCAATTGATCGTATAGATCTAATGTACATTTTAGAAGAGATTTCAAAAGCAAAAAAAAAAAAAAAAGTGGGAGAGAGAGAGGGAGAGAAAAAAGAAAACCTGTGGTGCTGATGTTGATGGCAGCTAAGAATATTGATTGTCAAATAGAAGTGGTTTATTCTTTGTAGTGTTAGTCTCTAATTTTGGTTGGAGCGCTTTAGTCGCCTGTACTTGTTTTCCAGGGGCTATCATGGCTGTGTATATGTTTCTTGCTCCATTTTCAAATTCAATCCAAACACACTTTATCTTCTCTAAATATTATTGTTAATATGTTAAGCTTATAATGATTCGCAATTATTATGTACTTAACGTCAAATACAGGCTAGCAGTAACCATGGCTTATTGGATATTGGTGCAGTGCCTTTATTTGTAGCTGTAACGGATTGACAAATTAATCACTTGTTTGTTTATTTAATTTTTTTTGTAGGAAAATGCTTTGGTGCCATGATTTTTTTTCTAGGCAATTAAATATTTTTAATGCACAATTATAATTATGATTTTGGTTAGTG

Network for GWHGAAEX007774

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12765.6	Cohesin_HEAT	852	893	1.70E-11
PF12830.6	Nipped-B_C	1344	1531	9.70E-52

Protein Sequence

>GWHPAAEX007774
MDCHQGTGFEKFCRLSNTIHSEIAPSLSLPSLPVYLGAADPAFALFEDVSGRGIDANRSEILAHSDRIVNLLRDCDVSYLNLKGEKNSPCSWGEVSKLYDEVITQYPTAFECSTAGPFQAEHHQHEILEKKPLLTNISSTGHGYYENGATLSNYIGGSNLAQEQLISIDSCKLKVKKKESDLNSLSSGPGPPNLEDMVGAFCEILEDFCGKAEVPDDMGGEGGPSVPLADIKSLINEIISASAKKILHLVSSETLVRVINVLDREIQCGQGLSINDNENSSTEALPIVLHALESIHAILVIMTKQDMPKQLYKEEIIERIVDFSRYQIMEVISAYNPFYSTPQEQNENAEFDYDEGDDEDIDNGSVGRKRRNVRSAYAKRSTVNKISSGVYSVAQKLCSILDFIKDLLSVVRLSDSCIFQLLKASVSTFLVDNIQLLQLKSINLLCGVFSSYPEQRDFLLDEILHLFPKLQFSKRSLRAYHLPDEEQKQIQMVTALLIQLAQFGANLPEATKTTSTMDAVSNSSVDVACPSKCRDVAQMVSIALWTKVVERCTNTKAQDLSDSKTILENLVTDLLTTLNLPEYPASAYILQVLCVVLLQNAGLKSKDISARCMAVDVLGTIAARLKHDSAIYRSESLWILQELAEGESEACSKVKDSCCVCFSGKGVNTCCQVCHRWFHEDCLGISGHEKLALDWSCHVCFCKRQLSAVQSYSNPQSKETVNTTKGAAKNSSKEPELITKLEILQQILLNYLEETGQKDDANILTRWFYLSLWHKDNPVNPEKVVYLIARLKSKAIFQGSEGTFPLPRDWAKKICLALGQNLSLSRGFDKILTHLLASLREGSSILRAKALRAVSSIVEAHPEVLCDERVQTAVEGRFCDSAISVREAALELVGRYIASHPEVGLKYFEKVSERIKDTGVSVRKRSIKIIRELCTSNTSFSEATNAFIEMISRITDEEASVQDLVCKTFYELWFEEPAEWQTEFVGDGSSVPVEVAMKTEQIVDMLRKMPNHHFLVTLIKRNLALDFLPQSTKSAGINAVSLASVRKRCELICKRLLERILQVEEGNIDEEEVCALPYVLALQSFCLVDPMLCAPATGPSQFVVTLQSYLKNQVNSKSIARLLESIISIIDAVLPLLRKPPQSIIEELVQDLKHMILRHNYLTVVHACIKCLCSLSRMSEKGASLVEYLFQIFFRHLCNPNFDNKQGLERSLFCLGILLRYGNEFMISSNDQPNIVQGLRLLKKYLLLEDFGLKVRALQAIGYALIAEPEHMLKEDIGKILEGSLASDVDPRIKMQAVQNLFEYLLDAESQLGSDCMAKSQTRGTEHAKNSVPVAAGAGDTNICGGIIQLYWSLILEKCLDVIDHVRESALKIVEIVLRQGLVHPMTCVPCLIALESDPLEMNSKLAHKLLMNMNEKYPSFFECRLGDGLQLSFKFIQSIAKNVASNNARGKFDVVAIAHIRQGISRIYRLIRGNRISRNKFMHSIVRKFESGYGNIPSISFLLYCTEILATLPFTSPDEPLYLIYDINRVIQLRAGAVEANMKMWSSFAQHSGSIKVPNVSNDLNEDSEEHNISNQHLESAMENTSAPTAETLQKFQVDWLDSTALQLLLKLKRHLKIMYGLNDARCQAFSLKEHPKVGESLSRQNIAFSASDVSTSSPTNYGDMVQKYQELKAALKEDTMDYATYASSVKRKRAPAPTPAPAPAPTLSPAQAPGPTLSPAPRSTRKAAQRRAAHNKGEQEEDDDDDEDDDNDDDDDISDEEWTGGPRKLDFSSVNGSVGRVTRQRALMCSN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06672	SCC2, NIPBL	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.640
SRP064423	SRR2545915	Juvenile tuber	17.670
SRP108465	SRR5643513	five period of Gastrodia elata	10.590
	SRR5643514	five period of Gastrodia elata	10.440
	SRR5643515	five period of Gastrodia elata	10.320
	SRR5643524	five period of Gastrodia elata	11.230
	SRR5643525	five period of Gastrodia elata	12.360
	SRR5643528	five period of Gastrodia elata	11.310
	SRR5643658	five period of Gastrodia elata	12.420
	SRR5643659	five period of Gastrodia elata	11.160
	SRR5643660	five period of Gastrodia elata	12.810
	SRR5643661	five period of Gastrodia elata	10.580
	SRR5643662	five period of Gastrodia elata	10.140
	SRR5643663	five period of Gastrodia elata	11.970
	SRR5643664	five period of Gastrodia elata	12.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.780
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.880
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.460
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.430
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.030
SRP279888	Gastro	Gastrodia elata tuber	14.30
	Juven	Juvenile tuber	19.63
	Mother_Gastro	Mother tuber of Gastrodia elata	13.14
	Mother_Juven	Mother tuber of Juvenile	17.82