Gene detail

Detail information of GWHGAAEX007776/evm.TU.scaffold_203.35

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2037	3.00E-72	Guanylate-binding protein
nr	gi\|743760253\|ref\|XP_010935963.1\|	0	PREDICTED: guanylate-binding protein 4-like isoform X1 [Elaeis guineensis]
trEMBL	tr\|D7SQJ1\|D7SQJ1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17922.3}
TAIR	AT2G38840	3.00E-72	Guanylate-binding family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000210	1239029	1296264	-

Transcript Sequence
>GWHTAAEX007776 CAGGCTTTCAAACTCTCCGCAGATTCTTCTCAATTCCGACGAAGAAAGGAAAACCCTTGAATCGTGTCTTTGATCTCACATTCCTAATCCTGAGTTGCACACTTCCAGAAACTCAACCGTTTAGTGTTTATGTTTCTCTTGTGGAAGTCTTTCTATGTTTCCTTTGGATATAATTCTCTATCCGGATCATCGCTGTGACATTCTCTCCAGTTTATTTCCAAGGTTCTAATACATATGCTCGGTTGGTGAACAATGTCACATTATGCTGACTTTCTTTTGATCTCCCTATCGCTGGGGTGGTTATGGATACTTGGGTCATGCGAAGTAAATGAATTCCGGCGAGCGTTTCCTATTGTTGAGCCCGATTTTGGCCATACCAAGCTTCGTATTGCAAGAGAAGGTTTGGATGCTATTCGAAGAATTAGATCTCCTATAGCTGCTGTTGCCGTCATTGGTCCATATCGCTCAGGAAAATCATTTCTACTTAACCAACTTCTCTCTCTTTCATGTGATGAAGGTTTTGGCGTTGGACATATGCGAGACACTAAAACAAAAGGAATTTGGGTTTGGGGTGATCCATTGAATGTGGTTGTTGATGGTGTAAATGTTTCTGTCCTGTATCTTGATACCGAGGGGTTTGAAAGCATTGGGAAGTCAAATGTATATGATGACAGGATCTTTGCATTAGCAACTATCATGAGTTCCGTGCTTATATATAATTTACCTGAGACGATTCGTGAGGCAGATATATCCCGCCTATCATTTGCTGTTGAAATTGCTGAAGAATTTTATGGCAGAGTCAAGGGTCAGGATGTTGCATTTGAGCCCGCTAATCTCTTGTGGCTTATTCAACGTGATTTCTTGCAAGGGAAATCTGTTCAACATATGGTTAATGAAGCCCTCCAACGAGTCCCCAATGCTGATGGGGACAGATATATTAATCAGGTCAACCAAATTAGGGACTCTTTGGCTATCATGGGAGATAATAGTACAGCATTTAGCTTACCCCAGCCTCATCTACAAAGGACAAAACTTTGTGAAATGAAAGATGCTGAGCTTGAGCATCCATATGTAGAGAAAAGGGAGCATTTGAAGCAACTTGTTGCATCAATTATACGTCCAAAGATTGTTCAAGGAAAAACCCTCAATGGGGAGGAGTTCGCATCTTTTTTAGAGCAGGTTCTTGAGGCCTTAAACAAAGGGGAAATTCCATCCACTGGTTCTCTTGTTGAGGTTTTTAACAAGGGAATCCTTGAGCGGTGCTTGAAGCTATACAATCAACAGATGGATAGGTTGCGTCTGCCATTATCTGAGGAGAAGTTACAACAATCTAATGATAAATCAAGAGTCGAAGTGAGAAAACTTTTTGATGAACAACATTTTGGTAGACATCATGCTGAACAATCTGCCTTTAAGCTTGAAGAGGAACTGCAGAAGGTTTATAAAAATTTCATTCTGGCCAATGAATATCAGTCCTCAAAACTGTGCGAGTCATTGTACACAAAATGTGACGATAAAATGGACCATCTGCAAACGTTGAGGCTTCCAACAATGGCTAAATTTAACGCTGGGTTTCTTCAGTGTAACCAAAGCTTTGAAAAGGAATGTGTTGGCCCTTCAAAAAAGAGTTACGAGCAGAGAATTACAAAGCTGCTGGGGAAATCTCGTGCGCTCTTCATCAAGGACTACAACAACAGGCTCTTCAACTGGCTGGTGGCTTTCTCTCTTGTAATGGTTGTGGTAGGTCGGTTTTTCGTGAAGTCCTTTTTTCTTGAGGTTGGCGCATGGCTGATGTTCGTCTTCCTGGAGACGTACACAAGGATGTTTTGGACGTCGGAGTCCCTCTATTATAACCCTGCCTGGCATGTCATTGTGGCCACCTGGGAGCATATTGTTTATAGCCCTGTACTTGATCTTGATAAATGGGCAATTCCTGTCGGATTACTGCTGCTGGTATTTGCACTCTATTGGCGGTGCTTTGGCCGAAGAAAGCTTGTTGGATACCTTTTGCCGCTTTACAACACCCCAAAGAGGGGGTCGAATCGGCCGAGATCGGACTAGCTGCTTACTTTGTTTGGTTGGTTGGTTATGGAGATTGCCCATCCCGCTACTGTGGTTTGTATTTACTTGGCACAATACAATTCTTTTATTGCTGTTATCTATTCACAGGTTGACCATATCCTCGGAGAATGTGGGCAGCACTAATTTCAACCTCTGCTCCTGCATTTCTTTACCATACAAGATCATTCGTTGATGCTGCTGTTGCAGTAGTAGTAGTTGTTGTTGTTGTTGATTTGTTGGTTTCTATGAAAAAGGAAAAAAAAATCCTGCTAATGATGAATGACTGAAATTCAGTCGTGAGAACGACACTTTTGATGCTTGTTTATAGGTTTTTTGGCTTTTATTTATAATAGAAATATGCTTGTGTTTTCTCGGCCTGTCCCTTGCCACTACCTAGCTCGACCTCATTCTTGTGCCACGTCTTCTTTTTTTAGAACAGTTAAGGGCTAGAGCCAAGCTTGTATTCCATTATACTCAATAAAACAAATACAAAGTTC

Network for GWHGAAEX007776

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02263.18	GBP	43	282	2.10E-36
PF02841.13	GBP_C	295	423	2.70E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding
GO:0003924	Molecular Function	GTPase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.090
SRP064423	SRR2545915	Juvenile tuber	8.380
SRP108465	SRR5643513	five period of Gastrodia elata	11.060
	SRR5643514	five period of Gastrodia elata	12.450
	SRR5643515	five period of Gastrodia elata	10.680
	SRR5643524	five period of Gastrodia elata	11.170
	SRR5643525	five period of Gastrodia elata	10.860
	SRR5643528	five period of Gastrodia elata	9.880
	SRR5643658	five period of Gastrodia elata	10.010
	SRR5643659	five period of Gastrodia elata	7.390
	SRR5643660	five period of Gastrodia elata	6.780
	SRR5643661	five period of Gastrodia elata	5.630
	SRR5643662	five period of Gastrodia elata	6.360
	SRR5643663	five period of Gastrodia elata	7.240
	SRR5643664	five period of Gastrodia elata	5.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.970
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.010
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.030
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.540
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.540
SRP279888	Gastro	Gastrodia elata tuber	7.62
	Juven	Juvenile tuber	8.66
	Mother_Gastro	Mother tuber of Gastrodia elata	13.32
	Mother_Juven	Mother tuber of Juvenile	11.74