Gene detail

Detail information of GWHGAAEX007778/evm.TU.scaffold_203.37

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2998	9.00E-124	Uncharacterized conserved protein
nr	gi\|743885442\|ref\|XP_010909923.1\|	1.08E-140	PREDICTED: ELMO domain-containing protein A [Elaeis guineensis]
trEMBL	tr\|M0RN78\|M0RN78_MUSAM	1.00E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P00470_001}
TAIR	AT1G03620	9.00E-124	ELMO/CED-12 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000210	1404074	1433985	+

Transcript Sequence
>GWHTAAEX007778 GAACAGCCTTACATTGCTATTTTGGGAAGCAGATCGACGGTGCAACGCGATGCCCTCCCACCACTGCTCTCCCCCGCTCCGCATAGTGCTCAATCGGGAATCGCTTATTGTATGGCAGCAAGCTCTACAATGGAAAGAAGCAAAAGAAAGCTGGGCAGGGGAGACTCGCTTGGTGGCTCTCTAGTGCAACTACGTGAATCTGCCGAAAGTTTCTTCATATCTTTCTCAGATCCATTTCTCTCGTTACATCGAGTAACCTGTCAGAGAGCACAACGAGAAAGCGCGAGGGAGGAGGAAGAGAGAGGGCACTTCCGTCCTCGTTCCTCAGGCATCTTCAGGAACTACGTTGTTTTTCATTACAGGTTGATGAAGATAATGGGTTCTTGATCTAGAAACCATGGAAGCATTGGCAAGATTCACTTCTATAGAAATGCAGCTTGACTATCATTATGGACCACATTGTAGCTAAATGTTTGTGCTGGCAGCATATGTGCCAGTGATATGGTTGGGCCACGTACATGGTTTGGAGGCTTCTTTAATCGTAACAGTAATAAACGTTGCGGTAATTATAAAAAGAGCATTGAGCATGCTCTTACTCCGCTACAGGAGCAAAGATTGCAAAGGCTCAAGGAACGATTGAATGTTCCTTTTGATGAGAGTCGGCCAGACCATCAAGATGCTCTCAGAGCCTTGTGGAATGCTTCTTTTCCAGAAACAAATCTCACAGGTCTTGTCTCCGAACAATGGAAAGATATGGGGTGGCAGGGTGCAAACCCATCAACTGACTTTAGGGGATGTGGATTTATTTCTCTTGAGAATCTTCTGTTTTTTGCACGAACCTACCCGGCTTCTTATCAAAGGATTTTATTCAAGCAAGAAGGTATGCGAGCTTCATGGGAGTACCCATTTGCTGTTGCTGGCATCAATATATCTTTTATGCTTATCCAAATGTTGGATCTTTATTCAGAAAAGCCCAAAACTGTTGCCGGAGCAAATTTCATAAGAATTCTTTCAGAAGATGAAGAAGCTTTTGATGTATTGTACTGTATAGCATTTCAGATGGTGGATGCACAGTGGCTGGCTATGCGTGCTTCTTACCTGCAATTCAATGAGGTGCTGCAGGCAACGAGGATCCAATTGGAAAGGGAGCTTTACTTGGAAGACGTTCATCGAATTCAGGATTTGCCGGCCTATAACCTCTTGTACAAATAGACTGTTACAAGGAGCATTCGATCAAAGTGGCACTGAAAAAAAACACTTGCCTTTTGTTATATCATAATTTATTTTTGTACTTACTATTTTTCTTTTTCTTTCATGTAAAACTTTGTAAATGATTACATACATGTAAGATTGCATTGTTTACATTGTGTTTGTTCTGTTGGGCAACTGCTTATAAATTGTAATAATATAGCATATGATATTATCATTATATAGCCTTTTTCTTAGGAGCCGTTTGTTTTGATGCCATGTGGA

Network for GWHGAAEX007778

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04727.12	ELMO_CED12	41	206	3.40E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.040
SRP064423	SRR2545915	Juvenile tuber	15.300
SRP108465	SRR5643513	five period of Gastrodia elata	5.490
	SRR5643514	five period of Gastrodia elata	6.480
	SRR5643515	five period of Gastrodia elata	7.250
	SRR5643524	five period of Gastrodia elata	6.500
	SRR5643525	five period of Gastrodia elata	9.110
	SRR5643528	five period of Gastrodia elata	12.090
	SRR5643658	five period of Gastrodia elata	13.360
	SRR5643659	five period of Gastrodia elata	7.370
	SRR5643660	five period of Gastrodia elata	6.430
	SRR5643661	five period of Gastrodia elata	5.840
	SRR5643662	five period of Gastrodia elata	4.980
	SRR5643663	five period of Gastrodia elata	5.720
	SRR5643664	five period of Gastrodia elata	5.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.980
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.990
SRP279888	Gastro	Gastrodia elata tuber	10.10
	Juven	Juvenile tuber	12.24
	Mother_Gastro	Mother tuber of Gastrodia elata	12.58
	Mother_Juven	Mother tuber of Juvenile	12.74