Detail information of GWHGAAEX007783/evm.TU.scaffold_204.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307592329|ref|YP_003899920.1| | 3.00E-18 | WD40 repeat-containing protein [Cyanothece sp. PCC 7822] |
| KOG | KOG0283 | 5.00E-177 | WD40 repeat-containing protein |
| nr | gi|743877037|ref|XP_010907750.1| | 0 | PREDICTED: WD repeat-containing protein 44-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9AUR7|COPA2_ORYSJ | 1.00E-09 | Coatomer subunit alpha-2 |
| trEMBL | tr|M0U6A2|M0U6A2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP04400_001} |
| TAIR | AT2G37670 | 5.00E-177 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000199 | 600115 | 610367 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007783
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 389 | 420 | 3.30E-06 |
| PF00400.31 | WD40 | 499 | 535 | 1.90E-07 |
| PF00400.31 | WD40 | 541 | 577 | 0.00012 |
| PF00400.31 | WD40 | 675 | 712 | 0.16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.460 |
| SRR2545915 | Juvenile tuber | 5.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.970 |
| SRR5643514 | five period of Gastrodia elata | 4.510 | |
| SRR5643515 | five period of Gastrodia elata | 3.580 | |
| SRR5643524 | five period of Gastrodia elata | 4.310 | |
| SRR5643525 | five period of Gastrodia elata | 4.160 | |
| SRR5643528 | five period of Gastrodia elata | 4.670 | |
| SRR5643658 | five period of Gastrodia elata | 3.750 | |
| SRR5643659 | five period of Gastrodia elata | 4.640 | |
| SRR5643660 | five period of Gastrodia elata | 5.410 | |
| SRR5643661 | five period of Gastrodia elata | 4.660 | |
| SRR5643662 | five period of Gastrodia elata | 6.420 | |
| SRR5643663 | five period of Gastrodia elata | 5.490 | |
| SRR5643664 | five period of Gastrodia elata | 5.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.760 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.060 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.27 |
| Juven | Juvenile tuber | 3.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.70 | |
| Mother_Juven | Mother tuber of Juvenile | 8.47 |