Detail information of GWHGAAEX007785/evm.TU.scaffold_204.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0483 | 8.00E-41 | Transcription factor HEX, contains HOX and HALZ domains |
| nr | gi|743861017|ref|XP_010943164.1| | 1.85E-49 | PREDICTED: homeobox-leucine zipper protein HOX12 [Elaeis guineensis] |
| Swissprot | tr|O23208|ATB40_ARATH | 1.00E-42 | Homeobox-leucine zipper protein ATHB-40 |
| trEMBL | tr|B9MXR7|B9MXR7_POPTR | 5.00E-45 | Homeobox-leucine zipper family protein {ECO:0000313|EMBL:ERP61034.1} |
| TAIR | AT4G36740 | 8.00E-41 | homeobox protein 40 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000199 | 795581 | 796604 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007785
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00046.28 | Homeobox | 40 | 93 | 2.20E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-other |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.410 |
| SRR2545915 | Juvenile tuber | 8.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.660 |
| SRR5643514 | five period of Gastrodia elata | 3.120 | |
| SRR5643515 | five period of Gastrodia elata | 2.300 | |
| SRR5643524 | five period of Gastrodia elata | 3.330 | |
| SRR5643525 | five period of Gastrodia elata | 8.130 | |
| SRR5643528 | five period of Gastrodia elata | 16.400 | |
| SRR5643658 | five period of Gastrodia elata | 16.050 | |
| SRR5643659 | five period of Gastrodia elata | 3.840 | |
| SRR5643660 | five period of Gastrodia elata | 3.000 | |
| SRR5643661 | five period of Gastrodia elata | 2.240 | |
| SRR5643662 | five period of Gastrodia elata | 2.920 | |
| SRR5643663 | five period of Gastrodia elata | 2.760 | |
| SRR5643664 | five period of Gastrodia elata | 2.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.950 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.38 |
| Juven | Juvenile tuber | 0.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.82 | |
| Mother_Juven | Mother tuber of Juvenile | 3.91 |