Detail information of GWHGAAEX007786/evm.TU.scaffold_204.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743774497|ref|XP_010917604.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9SR01|PP212_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g04750, mitochondrial (Precursor) |
| trEMBL | tr|V4T9F0|V4T9F0_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR46166.1} |
| TAIR | AT3G04750 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000199 | 881955 | 884036 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007786
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 163 | 185 | 0.18 |
| PF13041.5 | PPR_2 | 188 | 235 | 8.00E-12 |
| PF01535.19 | PPR | 267 | 288 | 0.41 |
| PF01535.19 | PPR | 295 | 319 | 0.14 |
| PF13812.5 | PPR_3 | 324 | 369 | 0.003 |
| PF01535.19 | PPR | 399 | 422 | 0.1 |
| PF01535.19 | PPR | 428 | 457 | 0.00057 |
| PF01535.19 | PPR | 466 | 490 | 0.08 |
| PF01535.19 | PPR | 499 | 524 | 0.075 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.720 |
| SRR2545915 | Juvenile tuber | 0.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.580 |
| SRR5643514 | five period of Gastrodia elata | 1.990 | |
| SRR5643515 | five period of Gastrodia elata | 2.530 | |
| SRR5643524 | five period of Gastrodia elata | 2.530 | |
| SRR5643525 | five period of Gastrodia elata | 1.230 | |
| SRR5643528 | five period of Gastrodia elata | 0.650 | |
| SRR5643658 | five period of Gastrodia elata | 0.660 | |
| SRR5643659 | five period of Gastrodia elata | 2.840 | |
| SRR5643660 | five period of Gastrodia elata | 3.860 | |
| SRR5643661 | five period of Gastrodia elata | 3.690 | |
| SRR5643662 | five period of Gastrodia elata | 4.650 | |
| SRR5643663 | five period of Gastrodia elata | 3.180 | |
| SRR5643664 | five period of Gastrodia elata | 4.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.620 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.61 |
| Juven | Juvenile tuber | 2.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.02 | |
| Mother_Juven | Mother tuber of Juvenile | 2.49 |