Detail information of GWHGAAEX007791/evm.TU.scaffold_204.22


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|521466192|ref|YP_008153489.1|9.00E-12RNA-binding protein [Sorangium cellulosum So0157-2]
KOGKOG01213.00E-81Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)
nrgi|302143335|emb|CBI21896.3|3.92E-88unnamed protein product [Vitis vinifera]
Swissprottr|Q84L14|NCBP2_ORYSJ2.00E-85Nuclear cap-binding protein subunit 2
trEMBLtr|E0CTI1|E0CTI1_VITVI1.00E-88Putative uncharacterized protein {ECO:0000313|EMBL:CBI21896.3}
TAIRAT5G442003.00E-81CAP-binding protein 20

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000019910764761089927+
Transcript Sequence

Network for GWHGAAEX007791

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_11061764.10E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12883NCBP2, CBP20 Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms34.650
SRR2545915Juvenile tuber42.830
SRP108465SRR5643513five period of Gastrodia elata17.640
SRR5643514five period of Gastrodia elata16.530
SRR5643515five period of Gastrodia elata15.150
SRR5643524five period of Gastrodia elata16.700
SRR5643525five period of Gastrodia elata20.900
SRR5643528five period of Gastrodia elata16.200
SRR5643658five period of Gastrodia elata22.570
SRR5643659five period of Gastrodia elata21.070
SRR5643660five period of Gastrodia elata17.460
SRR5643661five period of Gastrodia elata19.750
SRR5643662five period of Gastrodia elata19.630
SRR5643663five period of Gastrodia elata20.510
SRR5643664five period of Gastrodia elata19.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.010
SRR6049655Rhizomagastrodiae_C368-T10_good_114.910
SRR6049656Rhizomagastrodiae_C368-T07_good_115.240
SRR6049657Rhizomagastrodiae_C368-T07_good_116.760
SRR6049658Rhizomagastrodiae_C368-T04_good_112.270
SRR6049659Rhizomagastrodiae_C368-T04_good_115.050
SRR6049660Rhizomagastrodiae_C368-T01_good_115.990
SRR6049661Rhizomagastrodiae_C368-T04_good_111.690
SRR6049662Rhizomagastrodiae_C368-T01_good_111.900
SRR6049663Rhizomagastrodiae_C368-T01_good_115.070
SRR6049664Rhizomagastrodiae_C368-T10_good_116.040
SRR6049665Rhizomagastrodiae_C368-T10_good_116.040
SRP279888GastroGastrodia elata tuber 30.85
JuvenJuvenile tuber35.64
Mother_GastroMother tuber of Gastrodia elata 27.56
Mother_JuvenMother tuber of Juvenile 32.84