Gene detail

Detail information of GWHGAAEX007793/evm.TU.scaffold_204.26

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	1.00E-165	FOG: PPR repeat
nr	gi\|743863687\|ref\|XP_010943853.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Elaeis guineensis]
Swissprot	tr\|Q9LSL9\|PP445_ARATH	4.00E-166	Pentatricopeptide repeat-containing protein At5g65560
trEMBL	tr\|A5BCK7\|A5BCK7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78867.1}
trEMBL	tr\|A5BCK7\|A5BCK7_VITVI	7.00E-76	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78867.1}
trEMBL	tr\|A5BCK7\|A5BCK7_VITVI	3.00E-75	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78867.1}
trEMBL	tr\|A5BCK7\|A5BCK7_VITVI	2.00E-38	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78867.1}
TAIR	AT5G65560	1.00E-165	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000199	1196909	1223707	+

Transcript Sequence
>GWHTAAEX007793 AAATAATGAAGCGGTAGAAGTAATCAAGAATTCTCTGGAGCGTTGTACTGTATCGTTCGTCGGACGCTTTGTCCCTCCGCTCAAATTCACGGAGCCGCAGCCTTCTTTTATTCCTCCCATCTTTCACCCCGGCAATCTCTTTCTCCGCCGCCTCCATAGCCAAATGAGATGAAACTCTTTAGATCCTTCAATGGTGAGAAACCCTGTCTCCTTTTCTTCTCTCCTTCCCTTCATCTTCTCCAGAATTCGACATCAAGCTTTCTTTCTTCCCTTTCCCCTTCATCACTCCCTCTCTACGCTCATCGACGCTTCTTCATCTCCTTCCATCCACCAAATCTTTACCGACCCTCAATGGCGCCACAATCCCGATCTCTGCCGCCAGGCCCTCTCTCTTCAACCACGTCAAGCACTCCAAGTCCTACGCACCCATCCCGTTCCACTCCGCGCCCTCGATTTCTTCCATTTTATCACTCAGCAGCGTTTTCACAAGCATATTATCGACTTCTATTCCGTCATCCTCCAGCGGCTCGTGGCCGCCGGCTTCTTTGTCCCCGCACATAGGCTCAGGATCCTCATGATCAAGGCCTGCGATAATGAACATGATATTATAAGAACAATCGGGGTGCTGAAGGATTTGGATGCCCGTGGTTTCTCAATCGATGTTTTTTGCTGCAATACGATTTTGATTCGTTTGGGTAAGCTGGATTTGATCGGAGTTGTCATGGATGTTTACTGTCTGATGCTGGCAAGTGGGGTGGAACCAACAATTGTAACTTTCAATGCGATGATTAATGTTTTGTGCAGAAATGGGATGGTAAAGGAGGCAATGATGATACTAAACAGGGTATTGCGGTGTTATCTGTTACCTGATACGTTCACTTATACATCAATCATTTTAGGGAACTGCAGGAATGGGGACCTTTATTTGGGATTTAGGGTGTTTGATTACATGCAGAAGATGGGTTGTGAGCCTAATTCTGTGACTTACTCGATTTTGATTAATGGGTTGTGTGATAAAGGGGAAGTAAATGAGGCTTTGAATTTGATGAATGGGATGGTGGAGAGAGGCATCATGCCTACTGTTTACACATATACTCTACCCATTGCAGTTTTGTGCTGCAGTGGTTCTCTGGGAAAGGCGAGCGGTTTGATTGCGGATATGAAGAGGAGGGGGTGCATACCGAATGTTCAGACTTACACAGCACTTATCAGTGGTCTTTGCAGATCATACATGATAGAATTGGCTGTTGGATTCTTTAACAAAATGGTACTGAATGGTTTAACACTTAATACAGCAACATGTAATGCGTTGATCAATGGGCTTTGCGAAATGGGAAAGGTTCAATCTGCTTCTAGGATTTTCAGTATGATGGAGAGACTGGGTTGTTTGCCAAATACCCAAACATTTAATGAGATTATGAAAGGACACTGTTTGGTGGAAAGAGTTGAGAAAGCAATGATTCTCTTACATAGGATGCTTAAATTTGGTCCTTTACCAAATCAGATAACATACAACACTATCATTAATGGGTATTGCAAAACCAGCAATTTGAATAATGCAGTACGAATGGTTAACTTCATGAAGGACAAAGGGTGCAATCCTGATGAGTATACTTATACTGAACTTACATATGGATTTTGCGAAGCAGGAAAGCTGGATTTGGCTTCAAAGGCATTTGAGGAGATGCAGCAATTAGGTTTGAGACCAAATGAGGCTACATACACCACACTTATTGATGGCTATTGTAAGAACAAAAAGCTCGACGTTGCGCTGTTGTTGTTAGAGGGCATGGAAGAGAATGGTTGCAGTCCAAATGTGGAGACCTATAATGCTATCATTAGTGGGTTCTCAAAGGAAAATCGACTCACAGAAGCTGAGAGTCTGTTCAATCAATTGCTTGAGCGAAATCTGTCTCCTAATGTTGTTACATACACATCCTTGATAGATGGACTGTGCAGATATGGTGCAACTTCGTGTGGACGCAAAAAGATGGATGAAATGATGAAGCATGGCTGTGCTCCAAATCTCCACACCTATAATGTTCTAATATCAGGCTTTCTTCGAGAAGGCAGTCTTGAGGAGGCTGAGCAAATGTTTGCGGGATTGAAAGAAAATGGGTTTGTACCTGACCGTGTAACATTCACTTTATTGATGGATGGTTATGTGGCATTAGGCAGGCTGGATCTTGCCTTTTCTTTTATGAAGCAAATGATTGATGCTGGGTGCAAAGCAAATTATGGAAGTTATGCTGTCCTGAGGAAAGGACTGCAAAATGAACGCCAATTAATGGAGCAAAAAATTGCAATTTCTCCAAATGCAAACACTACGCACACTTTGGCAGAAAATGAAATGGACATTGACACTATTTCAAGCTTATTAAATAAGTTAGTTGAATTTGGCTGTGACCTTAGTGGCGATGTATTTAATATTTTGATTAGGGGATTGTGTAGAGAACAGAAGTGGTTTGAGGCAGATCAACTTAGTAGAATCATGATTGCTCATGGCTTTCTTCCAGAAGAGGAGACATATAATTCCTTTTTGCTAGTGTTTTCTTATCATTTGATGGTAGATAACGCCTTGGAAATCTTAAACACAATGATTGGCAGGGGATTTGCACCTCATCTGGTTTGCTACAAGTCATTAGTCTGTGCTCTCTGTAATGTGAACCGAACCGAAGATGCTCAACATCTATTTGAAAACATGCTTCTGCAGGATTGGAATCCAGATGAGATTGTATGGACAGTCCTTATTGATGGCTTGGTGAAGGAAGGAAAACAAGATTTTTGTATAAAGCTTCTTCATACTATGGAATCTTGTGGCCATGTTCCCTCTTCCCACACATATACTCTTTTGGGTAGTGAAGTTCCTAAAGAAGAGAGCTCTACTGACTGATGTCATGTGCTTGAAAATTTTTTGGTATTAAATACTTCCTGTCATTGATCACATCATAAATGGAGGAAGTGCAAAGTAACTGATTTTTTTTTTGGGTAAACACGATTGCTTGAACGGGGTTCCTTAGACAACGTGGATATGGATGGGAAGTGCCAGAAGAGCAGAGTTCCTCGTCTTTAAATGTGGCTATAATCAAGTTCAAGCTGGAATATTTGAAAAAAAGTCGGTAATCCTAGTGAAGGGATCATTCTTCTTAATATTTTCAGATCCTCTTCAGTTAGATGAGCA

Network for GWHGAAEX007793

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12854.6	PPR_1	188	217	6.40E-10
PF13041.5	PPR_2	226	275	9.30E-18
PF13041.5	PPR_2	305	345	1.70E-09
PF13041.5	PPR_2	367	414	8.00E-13
PF13041.5	PPR_2	436	484	1.00E-14
PF12854.6	PPR_1	503	535	2.40E-10
PF13041.5	PPR_2	541	590	6.10E-18
PF13041.5	PPR_2	611	658	6.20E-13
PF01535.19	PPR	744	772	0.091
PF01535.19	PPR	779	808	0.19
PF01535.19	PPR	813	839	0.14
PF01535.19	PPR	849	877	0.014

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.580
SRP064423	SRR2545915	Juvenile tuber	6.170
SRP108465	SRR5643513	five period of Gastrodia elata	2.630
	SRR5643514	five period of Gastrodia elata	2.890
	SRR5643515	five period of Gastrodia elata	2.160
	SRR5643524	five period of Gastrodia elata	2.150
	SRR5643525	five period of Gastrodia elata	2.310
	SRR5643528	five period of Gastrodia elata	2.100
	SRR5643658	five period of Gastrodia elata	1.470
	SRR5643659	five period of Gastrodia elata	4.730
	SRR5643660	five period of Gastrodia elata	4.190
	SRR5643661	five period of Gastrodia elata	3.890
	SRR5643662	five period of Gastrodia elata	5.500
	SRR5643663	five period of Gastrodia elata	4.840
	SRR5643664	five period of Gastrodia elata	4.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.080
SRP279888	Gastro	Gastrodia elata tuber	2.34
	Juven	Juvenile tuber	3.46
	Mother_Gastro	Mother tuber of Gastrodia elata	0.92
	Mother_Juven	Mother tuber of Juvenile	2.68