Detail information of GWHGAAEX007796/evm.TU.scaffold_2040.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 9.00E-19 | two component regulator [Flavobacterium johnsoniae UW101] |
| nr | gi|743852040|ref|XP_010940293.1| | 1.61E-147 | PREDICTED: inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 [Elaeis guineensis] |
| Swissprot | tr|Q84MA9|Y1063_ARATH | 7.00E-122 | Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 (Precursor) |
| trEMBL | tr|M0SEH0|M0SEH0_MUSAM | 2.00E-150 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P14030_001} |
| TAIR | AT1G60630 | 2.00E-121 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00002032 | 553 | 3589 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007796
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13855.5 | LRR_8 | 116 | 176 | 7.70E-08 |
| PF00069.24 | Pkinase | 317 | 408 | 2.90E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.760 |
| SRR2545915 | Juvenile tuber | 1.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.080 |
| SRR5643514 | five period of Gastrodia elata | 2.530 | |
| SRR5643515 | five period of Gastrodia elata | 3.040 | |
| SRR5643524 | five period of Gastrodia elata | 2.510 | |
| SRR5643525 | five period of Gastrodia elata | 2.350 | |
| SRR5643528 | five period of Gastrodia elata | 1.890 | |
| SRR5643658 | five period of Gastrodia elata | 0.870 | |
| SRR5643659 | five period of Gastrodia elata | 4.150 | |
| SRR5643660 | five period of Gastrodia elata | 3.990 | |
| SRR5643661 | five period of Gastrodia elata | 4.610 | |
| SRR5643662 | five period of Gastrodia elata | 4.960 | |
| SRR5643663 | five period of Gastrodia elata | 4.780 | |
| SRR5643664 | five period of Gastrodia elata | 6.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.350 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.890 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.030 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.010 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.680 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.93 |
| Juven | Juvenile tuber | 1.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.29 | |
| Mother_Juven | Mother tuber of Juvenile | 0.74 |