Detail information of GWHGAAEX007805/evm.TU.scaffold_205.18


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|15678860|ref|NP_275977.1|2.00E-11tRNA pseudouridine synthase A [Methanothermobacter thermautotrophicus str. Delta H]
KOGKOG25532.00E-177Pseudouridylate synthase
nrgi|449455575|ref|XP_004145528.1|0PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Cucumis sativus]
Swissprottr|O22928|PUSH_ARATH4.00E-18Putative tRNA pseudouridine synthase
trEMBLtr|A0A0A0L0J9|A0A0A0L0J9_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN55475.1}
TAIRAT1G203702.00E-177Pseudouridine synthase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000218350838352716-
Transcript Sequence

Network for GWHGAAEX007805

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01416.19PseudoU_synth_12793849.60E-13
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0009451Biological ProcessRNA modification
GO:0001522Biological Processpseudouridine synthesis
GO:0031119Biological ProcesstRNA pseudouridine synthesis
GO:0003723Molecular FunctionRNA binding
GO:0009982Molecular Functionpseudouridine synthase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.480
SRR2545915Juvenile tuber9.630
SRP108465SRR5643513five period of Gastrodia elata7.850
SRR5643514five period of Gastrodia elata9.000
SRR5643515five period of Gastrodia elata8.270
SRR5643524five period of Gastrodia elata9.680
SRR5643525five period of Gastrodia elata2.900
SRR5643528five period of Gastrodia elata2.860
SRR5643658five period of Gastrodia elata1.620
SRR5643659five period of Gastrodia elata13.280
SRR5643660five period of Gastrodia elata13.300
SRR5643661five period of Gastrodia elata9.210
SRR5643662five period of Gastrodia elata9.500
SRR5643663five period of Gastrodia elata8.100
SRR5643664five period of Gastrodia elata8.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.230
SRR6049655Rhizomagastrodiae_C368-T10_good_15.270
SRR6049656Rhizomagastrodiae_C368-T07_good_113.820
SRR6049657Rhizomagastrodiae_C368-T07_good_111.070
SRR6049658Rhizomagastrodiae_C368-T04_good_18.190
SRR6049659Rhizomagastrodiae_C368-T04_good_19.620
SRR6049660Rhizomagastrodiae_C368-T01_good_113.880
SRR6049661Rhizomagastrodiae_C368-T04_good_111.540
SRR6049662Rhizomagastrodiae_C368-T01_good_117.020
SRR6049663Rhizomagastrodiae_C368-T01_good_113.800
SRR6049664Rhizomagastrodiae_C368-T10_good_114.130
SRR6049665Rhizomagastrodiae_C368-T10_good_114.130
SRP279888GastroGastrodia elata tuber 9.98
JuvenJuvenile tuber17.58
Mother_GastroMother tuber of Gastrodia elata 3.04
Mother_JuvenMother tuber of Juvenile 5.38