Detail information of GWHGAAEX007811/evm.TU.scaffold_205.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4204 | 0 | Histone deacetylase complex, SIN3 component |
| nr | gi|672118406|ref|XP_008782411.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: paired amphipathic helix protein Sin3-like 4 [Phoenix dactylifera] |
| Swissprot | tr|O04539|SNL4_ARATH | 0 | Paired amphipathic helix protein Sin3-like 4 |
| trEMBL | tr|M0S1M7|M0S1M7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20690_001} |
| TAIR | AT1G70060 | 0 | SIN3-like 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000218 | 442837 | 461317 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007811
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02671.20 | PAH | 34 | 78 | 6.50E-16 |
| PF02671.20 | PAH | 114 | 158 | 1.80E-16 |
| PF02671.20 | PAH | 315 | 359 | 5.80E-12 |
| PF08295.11 | Sin3_corepress | 457 | 548 | 8.50E-36 |
| PF16879.4 | Sin3a_C | 1098 | 1346 | 1.40E-53 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Others |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11644 | SIN3A | Mitophagy - yeast | map04139 |
| Thyroid hormone signaling pathway | map04919 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 55.750 |
| SRR2545915 | Juvenile tuber | 48.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.860 |
| SRR5643514 | five period of Gastrodia elata | 28.810 | |
| SRR5643515 | five period of Gastrodia elata | 31.310 | |
| SRR5643524 | five period of Gastrodia elata | 29.060 | |
| SRR5643525 | five period of Gastrodia elata | 32.790 | |
| SRR5643528 | five period of Gastrodia elata | 32.530 | |
| SRR5643658 | five period of Gastrodia elata | 37.970 | |
| SRR5643659 | five period of Gastrodia elata | 31.740 | |
| SRR5643660 | five period of Gastrodia elata | 34.180 | |
| SRR5643661 | five period of Gastrodia elata | 29.080 | |
| SRR5643662 | five period of Gastrodia elata | 29.140 | |
| SRR5643663 | five period of Gastrodia elata | 32.840 | |
| SRR5643664 | five period of Gastrodia elata | 39.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 32.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 50.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 38.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 43.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 34.62 |
| Juven | Juvenile tuber | 42.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 48.74 | |
| Mother_Juven | Mother tuber of Juvenile | 74.63 |