Detail information of GWHGAAEX007814/evm.TU.scaffold_205.25


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|311108868|ref|YP_003981721.1|4.00E-33phospholipase D [Achromobacter xylosoxidans A8]
KOGKOG13290Phospholipase D1
nrgi|743875172|ref|XP_010907269.1|0PREDICTED: phospholipase D alpha 1 [Elaeis guineensis]
Swissprottr|Q43007|PLDA1_ORYSJ0Phospholipase D alpha 1 (Precursor)
trEMBLtr|X2JCU7|X2JCU7_COCNU0Phospholipase D {ECO:0000256|PIRNR:PIRNR036470}
TAIRAT3G157300phospholipase D alpha 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000218512446519784+
Transcript Sequence

Network for GWHGAAEX007814

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00168.29C281303.10E-13
PF00614.21PLDc3293684.20E-11
PF00614.21PLDc6596851.20E-07
PF12357.7PLD_C7308024.00E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01115PLD1_2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Thyroid hormone signaling pathwaymap04919
Glutamatergic synapsemap04724

Gene Ontology

GO term OntologyName
GO:0046470Biological Processphosphatidylcholine metabolic process
GO:0004630Molecular Functionphospholipase D activity
GO:0003824Molecular Functioncatalytic activity
GO:0005509Molecular Functioncalcium ion binding
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms96.010
SRR2545915Juvenile tuber95.960
SRP108465SRR5643513five period of Gastrodia elata173.800
SRR5643514five period of Gastrodia elata161.700
SRR5643515five period of Gastrodia elata149.840
SRR5643524five period of Gastrodia elata160.270
SRR5643525five period of Gastrodia elata115.430
SRR5643528five period of Gastrodia elata140.750
SRR5643658five period of Gastrodia elata113.880
SRR5643659five period of Gastrodia elata136.130
SRR5643660five period of Gastrodia elata140.080
SRR5643661five period of Gastrodia elata125.610
SRR5643662five period of Gastrodia elata119.320
SRR5643663five period of Gastrodia elata135.400
SRR5643664five period of Gastrodia elata110.790
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1146.590
SRR6049655Rhizomagastrodiae_C368-T10_good_1163.420
SRR6049656Rhizomagastrodiae_C368-T07_good_1159.910
SRR6049657Rhizomagastrodiae_C368-T07_good_1124.870
SRR6049658Rhizomagastrodiae_C368-T04_good_1103.560
SRR6049659Rhizomagastrodiae_C368-T04_good_1104.710
SRR6049660Rhizomagastrodiae_C368-T01_good_1114.650
SRR6049661Rhizomagastrodiae_C368-T04_good_1128.310
SRR6049662Rhizomagastrodiae_C368-T01_good_1197.670
SRR6049663Rhizomagastrodiae_C368-T01_good_1154.770
SRR6049664Rhizomagastrodiae_C368-T10_good_1216.940
SRR6049665Rhizomagastrodiae_C368-T10_good_1216.940
SRP279888GastroGastrodia elata tuber 110.54
JuvenJuvenile tuber207.80
Mother_GastroMother tuber of Gastrodia elata 140.16
Mother_JuvenMother tuber of Juvenile 131.46