Detail information of GWHGAAEX007816/evm.TU.scaffold_205.29


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|46447096|ref|YP_008461.1|2.00E-22hypothetical protein pc1462 [Candidatus Protochlamydia amoebophila UWE25]
KOGKOG19470Leucine rich repeat proteins, some proteins contain F-box
nrgi|672136635|ref|XP_008792024.1|0PREDICTED: EIN3-binding F-box protein 1-like [Phoenix dactylifera]
Swissprottr|Q9SKK0|EBF1_ARATH0EIN3-binding F-box protein 1
trEMBLtr|M0U4A8|M0U4A8_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P28510_001}
TAIRAT2G254900EIN3-binding F box protein 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000218561827564426+
Transcript Sequence

Network for GWHGAAEX007816

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13516.5LRR_63743951.1
PF13516.5LRR_65836060.039
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
K14515EBF1_2 MAPK signaling pathway - plant map04016
Plant hormone signal transductionmap04075

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms17.040
SRR2545915Juvenile tuber23.450
SRP108465SRR5643513five period of Gastrodia elata21.500
SRR5643514five period of Gastrodia elata18.790
SRR5643515five period of Gastrodia elata29.040
SRR5643524five period of Gastrodia elata18.900
SRR5643525five period of Gastrodia elata5.860
SRR5643528five period of Gastrodia elata10.820
SRR5643658five period of Gastrodia elata6.600
SRR5643659five period of Gastrodia elata24.060
SRR5643660five period of Gastrodia elata21.730
SRR5643661five period of Gastrodia elata16.530
SRR5643662five period of Gastrodia elata16.570
SRR5643663five period of Gastrodia elata20.620
SRR5643664five period of Gastrodia elata16.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.370
SRR6049655Rhizomagastrodiae_C368-T10_good_111.220
SRR6049656Rhizomagastrodiae_C368-T07_good_125.620
SRR6049657Rhizomagastrodiae_C368-T07_good_115.730
SRR6049658Rhizomagastrodiae_C368-T04_good_115.040
SRR6049659Rhizomagastrodiae_C368-T04_good_113.990
SRR6049660Rhizomagastrodiae_C368-T01_good_115.860
SRR6049661Rhizomagastrodiae_C368-T04_good_119.440
SRR6049662Rhizomagastrodiae_C368-T01_good_124.150
SRR6049663Rhizomagastrodiae_C368-T01_good_117.180
SRR6049664Rhizomagastrodiae_C368-T10_good_116.190
SRR6049665Rhizomagastrodiae_C368-T10_good_116.190
SRP279888GastroGastrodia elata tuber 22.06
JuvenJuvenile tuber12.34
Mother_GastroMother tuber of Gastrodia elata 29.29
Mother_JuvenMother tuber of Juvenile 15.71