Gene detail

Detail information of GWHGAAEX007818/evm.TU.scaffold_205.31

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186685368\|ref\|YP_001868564.1\|	1.00E-14	hypothetical protein Npun_F5300 [Nostoc punctiforme PCC 73102]
KOG	KOG0264	0	Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1
nr	gi\|380467913\|gb\|AFD61544.1\|	0	multicopy suppressor of IRA1 [Dendrobium nobile]
Swissprot	tr\|O22466\|MSI1_SOLLC	0	WD-40 repeat-containing protein MSI1
trEMBL	tr\|H9BQQ5\|H9BQQ5_DENNO	0	Multicopy suppressor of IRA1 {ECO:0000313\|EMBL:AFD61544.1}
TAIR	AT5G58230	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000218	568275	578923	-

Transcript Sequence
>GWHTAAEX007818 TTCGCTGGTACCCTAATATGTCTAATCCCGCTTCTTTTCCCTCGCACTTTCCGAACCCCCCGTTAGCTTTAGGTCCTACCCGCCGTTCATATAAACTCCGGCATCCTATAAAACGCGACCGAGCAACTTTTTAAACTCTCTAGTCGTTGCTTTGCTTGGACGCCGGAGAACGTCGACTCGAACGGCCTTGTGAAGCCGAGCAGATATGGCCAAGGATGAAGACGACTTCCGAGGGGAGATCGAGGAGCGGCTGATAAACGAGGAGTACAAGATCTGGAAGAAGAACACGCCGTTCCTTTATGATCTGGTGATTACGCATGCGCTGGAGTGGCCTTCCCTTACCGTGCAATGGCTACCAGATCGGGAGGAACCGCCGGGGAAGGACTACTCCGTTCAGAAGATGATCCTCGGCACCCATACCTCCGATAACGAACCTAATTACCTCATGCTCGCTCAAGTTCAGCTTCCGCTTGAGGATGCTGAGAATGATGCGCGGCAGTATGACGAAGAGCGCGGCGAGATTGGAGGGTTTGGTTGCGCTAGCGGCAAGGTTCAGATAATTCAGCAAATAAACCATGATGGGGAAGTAAACAGAGCTCGCCATATGCCTCAAAATTCATTTATAATTGCTACAAAAACAGTTAGTGCAGATGTTTATGTTTTTGATTACAGCAAGCATCCCTCAAAGCCTCCTTTAGATGGTGCTTGTAATCCTGATTTGAGATTGAAGGGGCATACAACTGAGGGTTATGGTTTGTCTTGGAGCCTTTTTAAACAGGGCCACTTGTTGAGTGGTTCAGATGATGCTCAAATTTGCTTGTGGGATATCAATGCATCACCCAAGAATAAGTCACTCGATGCTCTTCAGATATTTAAGGTCCATGATGGTGTTGTGGAAGATGTTGCTTGGCATTTGAGGCACGAGTACTTGTTTGGCTCTGTTGGTGATGATCAACATTTGCTTATATGGGATTTACGGTCCCCAGCAGTCAATAAACCAACTCAGTCTGTGATTGCTCATCAAGGAGAGGTTAATTGCCTGGCGTTCAATCCGTTCAACGAGTGGGTTGTGGCAACGGGCTCGACCGATAAAACTGTCAAGCTTTTTGACCTTCGAAAGATCAGCACCGCCCTGCACACATTCGACTGCCACAAGGAAGAGGTGTTCCAAGTTGGCTGGAGTCCTAAGAACGAGACAATACTGGCATCCTGCTGCTTGGGCAGGAGACTCATGGTGTGGGATCTGAGCAGGATTGATGAGGAGCAAACACCGGAAGATGCAGAAGATGGTCCGCCGGAGCTGCTATTTATACACGGAGGGCACACCAGCAAAATCTCTGATTTCTCTTGGAATCCTTGCGAGGATTGGGTCATTGCCAGCGTTGCTGAAGATAACATCCTTCAGATATGGCAGATGGCTGAGAACATCTACCATGATGATGACGATTTGCCTGCTGACGATTCTTCTAAACCATCCTGATCTAAGATATATATATATATATATAT

Network for GWHGAAEX007818

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12265.7	CAF1C_H4-bd	19	88	4.70E-29
PF00400.31	WD40	220	256	0.02
PF00400.31	WD40	264	302	3.40E-07
PF00400.31	WD40	310	346	0.18
PF00400.31	WD40	367	402	0.0017

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K10752	RBBP4, HAT2, CAF1, MIS16	Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	52.660
SRP064423	SRR2545915	Juvenile tuber	57.180
SRP108465	SRR5643513	five period of Gastrodia elata	42.660
	SRR5643514	five period of Gastrodia elata	37.210
	SRR5643515	five period of Gastrodia elata	39.510
	SRR5643524	five period of Gastrodia elata	35.460
	SRR5643525	five period of Gastrodia elata	72.530
	SRR5643528	five period of Gastrodia elata	80.990
	SRR5643658	five period of Gastrodia elata	68.850
	SRR5643659	five period of Gastrodia elata	51.030
	SRR5643660	five period of Gastrodia elata	51.050
	SRR5643661	five period of Gastrodia elata	52.680
	SRR5643662	five period of Gastrodia elata	56.260
	SRR5643663	five period of Gastrodia elata	42.390
	SRR5643664	five period of Gastrodia elata	52.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	58.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	51.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.770
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	49.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	52.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	53.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	54.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	60.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.060
SRP279888	Gastro	Gastrodia elata tuber	56.99
	Juven	Juvenile tuber	50.61
	Mother_Gastro	Mother tuber of Gastrodia elata	91.19
	Mother_Juven	Mother tuber of Juvenile	60.86