Detail information of GWHGAAEX007821/evm.TU.scaffold_205.34
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-106 | FOG: PPR repeat |
| nr | gi|743812620|ref|XP_010929475.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Elaeis guineensis] |
| Swissprot | tr|O49619|PP350_ARATH | 8.00E-107 | Pentatricopeptide repeat-containing protein At4g35130, chloroplastic (Precursor) |
| trEMBL | tr|C5YQV5|C5YQV5_SORBI | 1.00E-159 | Putative uncharacterized protein Sb08g019750 {ECO:0000313|EMBL:EES17293.1} |
| TAIR | AT4G35130 | 3.00E-106 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000218 | 597433 | 599861 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007821
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 76 | 115 | 1.70E-08 |
| PF01535.19 | PPR | 180 | 207 | 0.00059 |
| PF01535.19 | PPR | 283 | 310 | 7.70E-06 |
| PF13041.5 | PPR_2 | 384 | 431 | 2.10E-09 |
| PF01535.19 | PPR | 458 | 483 | 0.0023 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.610 |
| SRR2545915 | Juvenile tuber | 1.600 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.520 |
| SRR5643514 | five period of Gastrodia elata | 3.930 | |
| SRR5643515 | five period of Gastrodia elata | 3.400 | |
| SRR5643524 | five period of Gastrodia elata | 3.460 | |
| SRR5643525 | five period of Gastrodia elata | 1.600 | |
| SRR5643528 | five period of Gastrodia elata | 0.930 | |
| SRR5643658 | five period of Gastrodia elata | 0.910 | |
| SRR5643659 | five period of Gastrodia elata | 4.190 | |
| SRR5643660 | five period of Gastrodia elata | 3.310 | |
| SRR5643661 | five period of Gastrodia elata | 5.160 | |
| SRR5643662 | five period of Gastrodia elata | 4.340 | |
| SRR5643663 | five period of Gastrodia elata | 3.640 | |
| SRR5643664 | five period of Gastrodia elata | 2.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.910 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.17 |
| Juven | Juvenile tuber | 3.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.12 | |
| Mother_Juven | Mother tuber of Juvenile | 2.79 |