Gene detail

Detail information of GWHGAAEX007824/evm.TU.scaffold_205.38

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2722	Predicted membrane protein
nr	gi\|743772043\|ref\|XP_010916317.1\|	PREDICTED: uncharacterized protein LOC105041163 [Elaeis guineensis]
trEMBL	tr\|M0RRV9\|M0RRV9_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P13290_001}
TAIR	AT1G71090	Auxin efflux carrier family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000218	660185	663323	-

Transcript Sequence
>GWHTAAEX007824 CTTTGATTCACATGTCCGTCTCGATCTGTATTGTGTTGCGTAAAGGGATTCGATCCCTGCCGTTTTTTTTCTCTCCCCCGTCGCCGCTGGTTGTTCTGGTAGTGAGAATCTGAAACCCTAATTTTGCGGAAATTTGTTTTCTTGTTTTCATCGTCCGGTGTTGATATTATATTATCATCGTTTCTGCTATTTTGTTTCGTTCGCGCAATTATCAGTACAACTTATTGAAGGCTGGTTAAATCCTCGATATGATTTTCTGCAAAAAATTGGGCACTTTCCCTGTGAAAAAATACTAGAACTTAATCGGCGGCGTGCGTTTGCTGTGAGATTTTTTTCCTAATGGATAGTAGCACAATAAAGCAAGGGAATGAGAACTGGCTTTCAGCTGTGGTGCCGCTTATGAAACTCTTAACCCTAAGTGTCATTGGCCTCATACTCACCCACCCAAAAACCCAAATTATTCCTCGTGCCACCTTAAAGCTTCTAAGCAAGCTTGTCTTCGCTCTCTTCCTCCCATGTCTCATCTTTGTCCACCTTGGCCAATCCATCACATTGGAAGAAGTCCTCAAATGGTGGTTTGTGCCGGTCAATGTGCTCATTAGCACTGGAATTGGCTGTATTCTTGGATACATAGTGGCAATCATTTGCCATCCGCCTCCTCAGTTCTTTAGATTGACTGTGATCATGACTGGCTTTGGCAACACCGGAAATCTTTCCATTGCAATTATTGGATCTGTCTGCCATAGCTCTGATCAACCCTTTGGCCCTCATTGTCGTCGTACTGGCCTTGCCTATGTTTCTTGTGCTCAATGGGTTGCAGTGATTCTCGTGTATACGTTAGTATACCATATGATGGAACCTCCTATGGAACATTATGAGATTGTTTCCGAGGAAAATGAGGTCAATGAAGAGAGTGCTAGCAATATTAGCAGGCCTCTTCTTCATGAAGCGGAGTGGCCTGGGATGGAGGAAAAAGAGATGGTTCATTCAAAAACTCCTTTCATTGCAAGGGTCTTTGCTAGTATCTCAGGGTCTTCACAGAACTCACTTCTTGATATTAATCTAAGAGAAGACAAAAACTTTAGTGCTGCGCCGAGCAGTCCAAAATCCTTAAGATGCTTAGCGGAGCCAAAGGTTATCCGGAAGATGAGAATTGTTGCTGAGGAGACTCCTATTCAGCATATTCTTCAGCCGCCTACAATTGCTTCTCTGCTGGCTCTTATTGTGGGGATGGTTCCTGCATTTAGGAACTTGGTGTTTGGGAGTGATGCTCCTTTGTCCTTTATTACTGACAGTTTGGAGATCTTGGCAGGGGCAGTTGTTCCTTCAGTGATGCTGCTTCTAGGAGGAACACTTGCAGAAGGGCCAAATGATTCGTCTCTTGGAATGAGAACTACAGTTGGTATTATTGTTGCAAGGCTTTTGATCTTGCCATTTTTTGGAATAGGGGTAGTGACTTTGGCTGATTGGTTGCATCTTTTGTTACAAGAAGATCAGATGTACAGATTTGCTCTTCTGTTACAGTATACAATGCCAAGTGCTATATTGCTGGGAGCAATTGCAAGCCTCAGGGGCTATGCTGTAAAGGAAGTTTCAGCTTTATTGTTTTGGCAGCATATCCTTGCTATTTTTTCGCTCTCTGTTTATATTGTCATATATTTCAAATTGCTTTCGTATGTTTGAGGTAAAAATATTTCAACTTTTGTTATGTGAAATGCATGTGGAAATTTTATTGTCTTAATATACAACTTAGCTTGTTTACTAATATGTAAACTGGTGCTATGTCAATGATCTGTGTATGAAATTACTTATATAAAGTGTATTTGTGTTGTACTGTTATTGTATTATTTTATTTCACATACATTTGATTATCTAGCCTTTTTCATTGAAATATCTCTTAATCAATTTGCACACTGCTTGACATGTTAGAAGGATAACTTTTGTGAATTCTCAGCATTGTTATTTCCGGATATTGCATAGATCCCTTTTTATTTTTGTTGTATACTTTGTTATGGATTACTTCCTAGTTAATTGCCATCAATTCGTTGCTCATATCTGCTTTAGTTTCTTTTGTCAATCTAGGTGATGTTTCTGGCATTTACAATTGAATACTTTGTCATTGCATGGTATGGTATTTAGCATGACGATGCAATCAGGATTATTAGAAAATGCTGCCTTAGTGGGGCTTGACTTCACTCACTCGATCAATGAGTGGGTGTAGCCCAGGGTACACATCAATGGGCTTAATGAACAATAATTGGATTCTAAATTTCTAGAACCTATCGTTCTATCTGTTGTGTGACCATATTGTTGTTGGCACTGAGGGTGGGAATTTTTATTAAGTTGTGTTTGCAATTTATTTGCAGAGCAGTTTTAGACGTTAGAAATTATGAAAAAGGCGAAGAATAAAAAGAGTGAAGAGGGCAAGGGATAAAAGGAAGAGCCAATGGAACAGTTAATCTATGGGGGAAGAAATTTCTTCTTCTGCTTTGTGTTTTAGTCAGTTGTTACACCTGAATCGCTTGTTAATTTGTTGCCTAACAACTTCATTTCTTTTTTCTTTTCTACTTATTACTTATGGTGGCTACTGCGTATGTAATGACTGCCAATCCTTTGCTTCCAAAATTAGTGAAGAAACCTTAGAATTCATCTATACCTTCAGTGGAGAAGGGTAGACATCCACTAGTACAAACACTTTTTTATGAGGCATTCTCCTTGAGTCATCCACTAAAATTTTGGAACCTGATGTGAGAACATGAGTTCAAAATGAAGCTAAAAATAGTAAGCCATTACTTCTTTTTTTTCAGAGCTTGAATTATAGAGAAGCACCATGATATAATGTATTGCAAATTTGACTCTTATTAGCTCAAAGAATCTTCATATGGTGAATGCTAGGATTTGAAAGTGTGCTTCATTTATGGTTATTCAAGCTGTTCCAATAGCTACTAGTCAATGATATTTTATGAGATGGGATTAATTGTTATCATGATTTTTTATCTAGACCTAAACAAATGATAAAATTCCTGATTATTTAATTGAAAAAAATATTATTAGTTAATAAATTTATAATTAGTAATTAGTATACTCATGATCTTAAAATATAAGATTAACTTTAACAAATTTAGTACTTTGTATATTC

Network for GWHGAAEX007824

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03547.17	Mem_trans	17	437	3.00E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.920
SRP064423	SRR2545915	Juvenile tuber	31.480
SRP108465	SRR5643513	five period of Gastrodia elata	15.100
	SRR5643514	five period of Gastrodia elata	11.290
	SRR5643515	five period of Gastrodia elata	9.740
	SRR5643524	five period of Gastrodia elata	12.130
	SRR5643525	five period of Gastrodia elata	19.500
	SRR5643528	five period of Gastrodia elata	14.630
	SRR5643658	five period of Gastrodia elata	30.890
	SRR5643659	five period of Gastrodia elata	7.090
	SRR5643660	five period of Gastrodia elata	7.780
	SRR5643661	five period of Gastrodia elata	7.410
	SRR5643662	five period of Gastrodia elata	10.180
	SRR5643663	five period of Gastrodia elata	11.410
	SRR5643664	five period of Gastrodia elata	13.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.070
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	53.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.630
SRP279888	Gastro	Gastrodia elata tuber	11.81
	Juven	Juvenile tuber	19.76
	Mother_Gastro	Mother tuber of Gastrodia elata	9.90
	Mother_Juven	Mother tuber of Juvenile	11.09