Detail information of GWHGAAEX007825/evm.TU.scaffold_205.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3002 | 3.00E-37 | Zn finger protein |
| nr | gi|357114460|ref|XP_003559018.1| | 8.71E-60 | PREDICTED: putative E3 ubiquitin-protein ligase SINA-like 9 isoform X1 [Brachypodium distachyon] |
| Swissprot | tr|Q9FKD9|SINL6_ARATH | 9.00E-38 | Putative E3 ubiquitin-protein ligase SINA-like 6 |
| trEMBL | tr|M0WIS6|M0WIS6_HORVD | 2.00E-62 | E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113} |
| TAIR | AT5G37870 | 3.00E-37 | Protein with RING/U-box and TRAF-like domains |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000218 | 747485 | 764556 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007825
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03145.15 | Sina | 146 | 265 | 2.40E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04506 | SIAH1 | Ubiquitin mediated proteolysis | map04120 |
| MAPK signaling pathway - fly | map04013 | ||
| Wnt signaling pathway | map04310 | ||
| p53 signaling pathway | map04115 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007275 | Biological Process | multicellular organism development |
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.060 |
| SRR2545915 | Juvenile tuber | 9.080 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.640 |
| SRR5643514 | five period of Gastrodia elata | 7.660 | |
| SRR5643515 | five period of Gastrodia elata | 7.410 | |
| SRR5643524 | five period of Gastrodia elata | 7.270 | |
| SRR5643525 | five period of Gastrodia elata | 10.990 | |
| SRR5643528 | five period of Gastrodia elata | 8.070 | |
| SRR5643658 | five period of Gastrodia elata | 9.540 | |
| SRR5643659 | five period of Gastrodia elata | 6.380 | |
| SRR5643660 | five period of Gastrodia elata | 6.260 | |
| SRR5643661 | five period of Gastrodia elata | 8.460 | |
| SRR5643662 | five period of Gastrodia elata | 4.560 | |
| SRR5643663 | five period of Gastrodia elata | 4.300 | |
| SRR5643664 | five period of Gastrodia elata | 5.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.380 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.960 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.960 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.21 |
| Juven | Juvenile tuber | 7.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.53 | |
| Mother_Juven | Mother tuber of Juvenile | 6.30 |