Gene detail

Database	Orthologs	E value	Annotation
KOG	KOG2930	4.00E-36	SCF ubiquitin ligase, Rbx1 component
nr	gi\|720018598\|ref\|XP_010261838.1\|	6.61E-50	PREDICTED: RING-box protein 1a [Nelumbo nucifera]
Swissprot	tr\|Q940X7\|RBX1A_ARATH	9.00E-41	RING-box protein 1a
trEMBL	tr\|Q5DNW3\|Q5DNW3_FRAAN	8.00E-50	Putative ring-box protein {ECO:0000313\|EMBL:AAT10276.1} (Fragment)
TAIR	AT5G20570	4.00E-36	RING-box 1

Scaffold	Start	End	Strand
GWHAAEX00000218	776704	788112	+

Transcript Sequence
>GWHTAAEX007827 ATGGGATGCCCTAGTTTCAGTCTGCGGGGATTTGCAAAGGAGGCGACGACTCAATTCGGGCCAAATCGGCTTCTCCGGCTTCGTGCATCTCTGAGCTTTCCCATTCTAATGGCGACTCTGGACACAGACATCAACATGGTGCCAGTCGGGGAGGGATCAAGCGGCGCGGGGCCTTCTTCGTCGAGGAAACCAAAGCGGTTCGAGATCAAGAAGTGGAACGCTGTCGCTCTATGGGCCTGGGATATTGTGGTCGATAACTGTGCAATTTGCCGAAACCACATCATGGATCTATGCATTGAATGCCAGGCCAATCAAGCAAGTGCCACAAGCGAGGAGTGCACTGTGGCATGGGGTGCAATTTATGATATTAACTTGATTGCATATTTAAATGTGGGCATCTGA

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation

Gene family	subfamily
--	--

KO	Enzyme	pathway	mapID
K03868	RBX1, ROC1	Protein processing in endoplasmic reticulum	map04141
		Ubiquitin mediated proteolysis	map04120
		Nucleotide excision repair	map03420
		Wnt signaling pathway	map04310
		Hedgehog signaling pathway - fly	map04341
		TGF-beta signaling pathway	map04350
		HIF-1 signaling pathway	map04066
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Oocyte meiosis	map04114
		Circadian rhythm	map04710

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	73.060
SRP064423	SRR2545915	Juvenile tuber	70.480
SRP108465	SRR5643513	five period of Gastrodia elata	107.650
	SRR5643514	five period of Gastrodia elata	81.350
	SRR5643515	five period of Gastrodia elata	88.910
	SRR5643524	five period of Gastrodia elata	99.700
	SRR5643525	five period of Gastrodia elata	53.460
	SRR5643528	five period of Gastrodia elata	59.310
	SRR5643658	five period of Gastrodia elata	49.130
	SRR5643659	five period of Gastrodia elata	93.990
	SRR5643660	five period of Gastrodia elata	79.110
	SRR5643661	five period of Gastrodia elata	76.810
	SRR5643662	five period of Gastrodia elata	63.080
	SRR5643663	five period of Gastrodia elata	78.390
	SRR5643664	five period of Gastrodia elata	82.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	59.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.510
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	77.670
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	73.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	86.500
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	72.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	70.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	90.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	78.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	76.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	89.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	89.860
SRP279888	Gastro	Gastrodia elata tuber	119.12
	Juven	Juvenile tuber	105.78
	Mother_Gastro	Mother tuber of Gastrodia elata	77.54
	Mother_Juven	Mother tuber of Juvenile	91.03