Detail information of GWHGAAEX007829/evm.TU.scaffold_205.45
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|194336180|ref|YP_002017974.1| | 2.00E-26 | serine/threonine protein kinase [Pelodictyon phaeoclathratiforme BU-1] |
| KOG | KOG1187 | 0 | Serine/threonine protein kinase |
| nr | gi|586701402|ref|XP_006845001.1| | 0 | hypothetical protein AMTR_s00058p00199870 [Amborella trichopoda] |
| Swissprot | tr|Q9CAL8|PEK13_ARATH | 0 | Proline-rich receptor-like protein kinase PERK13 |
| trEMBL | tr|W1PGD9|W1PGD9_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN06676.1} |
| TAIR | AT1G70460 | 0 | root hair specific 10 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000218 | 822871 | 827865 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007829
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 360 | 627 | 2.60E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_PERK-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.700 |
| SRR2545915 | Juvenile tuber | 1.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.500 |
| SRR5643514 | five period of Gastrodia elata | 0.350 | |
| SRR5643515 | five period of Gastrodia elata | 0.660 | |
| SRR5643524 | five period of Gastrodia elata | 0.750 | |
| SRR5643525 | five period of Gastrodia elata | 2.790 | |
| SRR5643528 | five period of Gastrodia elata | 2.400 | |
| SRR5643658 | five period of Gastrodia elata | 3.870 | |
| SRR5643659 | five period of Gastrodia elata | 0.630 | |
| SRR5643660 | five period of Gastrodia elata | 0.540 | |
| SRR5643661 | five period of Gastrodia elata | 0.210 | |
| SRR5643662 | five period of Gastrodia elata | 0.300 | |
| SRR5643663 | five period of Gastrodia elata | 0.370 | |
| SRR5643664 | five period of Gastrodia elata | 0.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.280 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.310 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.50 |
| Juven | Juvenile tuber | 0.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.79 | |
| Mother_Juven | Mother tuber of Juvenile | 0.42 |