Detail information of GWHGAAEX007833/CADD00631.1.gene


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08920Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair
nrgi|743838500|ref|XP_010936715.1|0PREDICTED: serine/threonine-protein kinase ATM [Elaeis guineensis]
Swissprottr|Q9M3G7|ATM_ARATH0Serine/threonine-protein kinase ATM
trEMBLtr|M0T5G3|M0T5G3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P09140_001}
TAIRAT3G481900ataxia-telangiectasia mutated

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000218874014899942-
Transcript Sequence

Network for GWHGAAEX007833

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00454.26PI3_PI4_kinase2594998.40E-48
PF02260.19FATC5545832.80E-12
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K04728ATM, TEL1 Homologous recombination map03440
NF-kappa B signaling pathwaymap04064
FoxO signaling pathwaymap04068
Cell cyclemap04110
Apoptosismap04210
Apoptosis - flymap04214
p53 signaling pathwaymap04115
Cellular senescencemap04218

Gene Ontology

GO term OntologyName
GO:0016301Molecular Functionkinase activity
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms43.450
SRR2545915Juvenile tuber19.790
SRP108465SRR5643513five period of Gastrodia elata14.910
SRR5643514five period of Gastrodia elata15.000
SRR5643515five period of Gastrodia elata13.730
SRR5643524five period of Gastrodia elata15.290
SRR5643525five period of Gastrodia elata15.130
SRR5643528five period of Gastrodia elata8.730
SRR5643658five period of Gastrodia elata8.770
SRR5643659five period of Gastrodia elata15.370
SRR5643660five period of Gastrodia elata16.880
SRR5643661five period of Gastrodia elata13.660
SRR5643662five period of Gastrodia elata14.040
SRR5643663five period of Gastrodia elata14.750
SRR5643664five period of Gastrodia elata15.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.130
SRR6049655Rhizomagastrodiae_C368-T10_good_111.070
SRR6049656Rhizomagastrodiae_C368-T07_good_118.950
SRR6049657Rhizomagastrodiae_C368-T07_good_124.170
SRR6049658Rhizomagastrodiae_C368-T04_good_124.420
SRR6049659Rhizomagastrodiae_C368-T04_good_126.600
SRR6049660Rhizomagastrodiae_C368-T01_good_122.630
SRR6049661Rhizomagastrodiae_C368-T04_good_122.110
SRR6049662Rhizomagastrodiae_C368-T01_good_114.690
SRR6049663Rhizomagastrodiae_C368-T01_good_119.950
SRR6049664Rhizomagastrodiae_C368-T10_good_114.620
SRR6049665Rhizomagastrodiae_C368-T10_good_114.620
SRP279888GastroGastrodia elata tuber 31.12
JuvenJuvenile tuber32.59
Mother_GastroMother tuber of Gastrodia elata 16.55
Mother_JuvenMother tuber of Juvenile 21.05