Detail information of GWHGAAEX007845/evm.TU.scaffold_206.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 8.00E-25 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|695023622|ref|XP_009398994.1| | 0 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8LFN2|Y3037_ARATH | 0 | Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 (Precursor) |
| trEMBL | tr|B9IPT7|B9IPT7_POPTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:EEE99813.2} |
| TAIR | AT3G03770 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000206 | 86881 | 94519 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007845
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13855.5 | LRR_8 | 106 | 166 | 1.80E-08 |
| PF07714.16 | Pkinase_Tyr | 482 | 742 | 6.10E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-VI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.410 |
| SRR2545915 | Juvenile tuber | 12.270 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.030 |
| SRR5643514 | five period of Gastrodia elata | 3.590 | |
| SRR5643515 | five period of Gastrodia elata | 2.310 | |
| SRR5643524 | five period of Gastrodia elata | 2.710 | |
| SRR5643525 | five period of Gastrodia elata | 1.240 | |
| SRR5643528 | five period of Gastrodia elata | 0.780 | |
| SRR5643658 | five period of Gastrodia elata | 1.710 | |
| SRR5643659 | five period of Gastrodia elata | 3.850 | |
| SRR5643660 | five period of Gastrodia elata | 3.250 | |
| SRR5643661 | five period of Gastrodia elata | 1.950 | |
| SRR5643662 | five period of Gastrodia elata | 1.350 | |
| SRR5643663 | five period of Gastrodia elata | 1.520 | |
| SRR5643664 | five period of Gastrodia elata | 1.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.890 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.16 |
| Juven | Juvenile tuber | 1.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.28 | |
| Mother_Juven | Mother tuber of Juvenile | 0.42 |