Detail information of GWHGAAEX007847/evm.TU.scaffold_206.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|302391769|ref|YP_003827589.1| | 1.00E-07 | ankyrin [Acetohalobium arabaticum DSM 5501] |
| KOG | KOG0521 | 9.00E-08 | Putative GTPase activating proteins (GAPs) |
| nr | gi|743880445|ref|XP_010908652.1| | 1.86E-70 | PREDICTED: ankyrin repeat domain-containing protein 65-like [Elaeis guineensis] |
| Swissprot | tr|Q9SMX5|AGD4_ARATH | 2.00E-08 | ADP-ribosylation factor GTPase-activating protein AGD4 |
| trEMBL | tr|M5W4N7|M5W4N7_PRUPE | 2.00E-66 | Uncharacterized protein {ECO:0000313|EMBL:EMJ04233.1} |
| trEMBL | tr|M5W4N7|M5W4N7_PRUPE | 9.00E-06 | Uncharacterized protein {ECO:0000313|EMBL:EMJ04233.1} |
| TAIR | AT1G10870 | 9.00E-08 | ARF-GAP domain 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000206 | 167495 | 169022 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007847
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13606.5 | Ank_3 | 173 | 201 | 0.00069 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.780 |
| SRR2545915 | Juvenile tuber | 9.720 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.770 |
| SRR5643514 | five period of Gastrodia elata | 17.430 | |
| SRR5643515 | five period of Gastrodia elata | 9.500 | |
| SRR5643524 | five period of Gastrodia elata | 16.140 | |
| SRR5643525 | five period of Gastrodia elata | 19.550 | |
| SRR5643528 | five period of Gastrodia elata | 10.610 | |
| SRR5643658 | five period of Gastrodia elata | 18.950 | |
| SRR5643659 | five period of Gastrodia elata | 16.360 | |
| SRR5643660 | five period of Gastrodia elata | 19.440 | |
| SRR5643661 | five period of Gastrodia elata | 24.510 | |
| SRR5643662 | five period of Gastrodia elata | 19.330 | |
| SRR5643663 | five period of Gastrodia elata | 16.520 | |
| SRR5643664 | five period of Gastrodia elata | 12.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.720 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.33 |
| Juven | Juvenile tuber | 99.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.58 | |
| Mother_Juven | Mother tuber of Juvenile | 50.83 |