Detail information of GWHGAAEX007850/evm.TU.scaffold_206.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|194335065|ref|YP_002016925.1| | 6.00E-07 | rhomboid family protein [Prosthecochloris aestuarii DSM 271] |
| KOG | KOG2632 | 3.00E-160 | Rhomboid family proteins |
| nr | gi|727694660|gb|AIY60686.1| | 0 | rhomboid protein Phaam_RBL15 [Phalaenopsis amabilis] |
| Swissprot | tr|Q8LB17|Y3846_ARATH | 2.00E-178 | Uncharacterized protein At3g58460 |
| trEMBL | tr|M0T982|M0T982_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P22340_001} |
| TAIR | AT3G58460 | 3.00E-160 | RHOMBOID-like protein 15 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000206 | 293315 | 322661 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007850
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01694.21 | Rhomboid | 60 | 212 | 3.60E-24 |
| PF00627.30 | UBA | 370 | 404 | 1.60E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.110 |
| SRR2545915 | Juvenile tuber | 30.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.440 |
| SRR5643514 | five period of Gastrodia elata | 28.120 | |
| SRR5643515 | five period of Gastrodia elata | 24.250 | |
| SRR5643524 | five period of Gastrodia elata | 27.820 | |
| SRR5643525 | five period of Gastrodia elata | 22.700 | |
| SRR5643528 | five period of Gastrodia elata | 19.380 | |
| SRR5643658 | five period of Gastrodia elata | 26.290 | |
| SRR5643659 | five period of Gastrodia elata | 16.650 | |
| SRR5643660 | five period of Gastrodia elata | 14.130 | |
| SRR5643661 | five period of Gastrodia elata | 14.430 | |
| SRR5643662 | five period of Gastrodia elata | 14.060 | |
| SRR5643663 | five period of Gastrodia elata | 16.490 | |
| SRR5643664 | five period of Gastrodia elata | 13.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 28.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 36.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 36.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.63 |
| Juven | Juvenile tuber | 20.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.00 | |
| Mother_Juven | Mother tuber of Juvenile | 12.61 |