Detail information of GWHGAAEX007851/evm.TU.scaffold_206.11_evm.TU.scaffold_206.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41977.00E-151FOG: PPR repeat
nrgi|672171962|ref|XP_008806061.1|0PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Phoenix dactylifera]
Swissprottr|Q9STF3|PP265_ARATH2.00E-151Pentatricopeptide repeat-containing protein At3g46790, chloroplastic (Precursor)
trEMBLtr|B8LQA8|B8LQA8_PICSI4.00E-165Putative uncharacterized protein {ECO:0000313|EMBL:ABR17838.1}
trEMBLtr|B8LQA8|B8LQA8_PICSI4.00E-58Putative uncharacterized protein {ECO:0000313|EMBL:ABR17838.1}
trEMBLtr|B8LQA8|B8LQA8_PICSI2.00E-48Putative uncharacterized protein {ECO:0000313|EMBL:ABR17838.1}
TAIRAT3G467907.00E-151Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000206323698326234-
Transcript Sequence

Network for GWHGAAEX007851

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR891160.0053
PF01535.19PPR1601860.00011
PF01535.19PPR1892150.002
PF13041.5PPR_22873341.90E-07
PF01535.19PPR3623860.013
PF14432.5DYW_deaminase4615843.60E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms22.050
SRR2545915Juvenile tuber18.300
SRP108465SRR5643513five period of Gastrodia elata21.920
SRR5643514five period of Gastrodia elata19.710
SRR5643515five period of Gastrodia elata17.670
SRR5643524five period of Gastrodia elata18.280
SRR5643525five period of Gastrodia elata31.690
SRR5643528five period of Gastrodia elata17.960
SRR5643658five period of Gastrodia elata24.990
SRR5643659five period of Gastrodia elata26.560
SRR5643660five period of Gastrodia elata29.290
SRR5643661five period of Gastrodia elata25.110
SRR5643662five period of Gastrodia elata25.600
SRR5643663five period of Gastrodia elata28.290
SRR5643664five period of Gastrodia elata26.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.350
SRR6049655Rhizomagastrodiae_C368-T10_good_113.940
SRR6049656Rhizomagastrodiae_C368-T07_good_123.210
SRR6049657Rhizomagastrodiae_C368-T07_good_123.860
SRR6049658Rhizomagastrodiae_C368-T04_good_130.700
SRR6049659Rhizomagastrodiae_C368-T04_good_131.750
SRR6049660Rhizomagastrodiae_C368-T01_good_127.720
SRR6049661Rhizomagastrodiae_C368-T04_good_129.310
SRR6049662Rhizomagastrodiae_C368-T01_good_123.010
SRR6049663Rhizomagastrodiae_C368-T01_good_125.110
SRR6049664Rhizomagastrodiae_C368-T10_good_118.990
SRR6049665Rhizomagastrodiae_C368-T10_good_118.990
SRP279888GastroGastrodia elata tuber 37.78
JuvenJuvenile tuber18.56
Mother_GastroMother tuber of Gastrodia elata 26.54
Mother_JuvenMother tuber of Juvenile 11.45