Detail information of GWHGAAEX007852/evm.TU.scaffold_206.13


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|186680628|ref|YP_001863824.1|1.00E-08transcription antitermination protein NusB [Nostoc punctiforme PCC 73102]
nrgi|695005122|ref|XP_009388998.1|1.92E-107PREDICTED: uncharacterized protein LOC103975688 [Musa acuminata subsp. malaccensis]
trEMBLtr|K4APA2|K4APA2_SETIT2.00E-94Uncharacterized protein {ECO:0000313|EnsemblPlants:Si040750m}
TAIRAT4G263704.00E-84antitermination NusB domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000206326745340992+
Transcript Sequence

Network for GWHGAAEX007852

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01029.17NusB1822782.00E-13
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms56.170
SRR2545915Juvenile tuber55.450
SRP108465SRR5643513five period of Gastrodia elata37.170
SRR5643514five period of Gastrodia elata41.430
SRR5643515five period of Gastrodia elata37.710
SRR5643524five period of Gastrodia elata38.060
SRR5643525five period of Gastrodia elata59.080
SRR5643528five period of Gastrodia elata49.450
SRR5643658five period of Gastrodia elata73.070
SRR5643659five period of Gastrodia elata31.360
SRR5643660five period of Gastrodia elata30.760
SRR5643661five period of Gastrodia elata30.940
SRR5643662five period of Gastrodia elata35.590
SRR5643663five period of Gastrodia elata35.700
SRR5643664five period of Gastrodia elata32.060
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_133.050
SRR6049655Rhizomagastrodiae_C368-T10_good_131.670
SRR6049656Rhizomagastrodiae_C368-T07_good_129.700
SRR6049657Rhizomagastrodiae_C368-T07_good_136.360
SRR6049658Rhizomagastrodiae_C368-T04_good_129.640
SRR6049659Rhizomagastrodiae_C368-T04_good_132.700
SRR6049660Rhizomagastrodiae_C368-T01_good_130.540
SRR6049661Rhizomagastrodiae_C368-T04_good_127.770
SRR6049662Rhizomagastrodiae_C368-T01_good_130.010
SRR6049663Rhizomagastrodiae_C368-T01_good_132.640
SRR6049664Rhizomagastrodiae_C368-T10_good_127.840
SRR6049665Rhizomagastrodiae_C368-T10_good_127.840
SRP279888GastroGastrodia elata tuber 45.68
JuvenJuvenile tuber36.99
Mother_GastroMother tuber of Gastrodia elata 24.35
Mother_JuvenMother tuber of Juvenile 31.60