Detail information of GWHGAAEX007854/evm.TU.scaffold_206.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0498 | 3.00E-150 | K+-channel ERG and related proteins, contain PAS/PAC sensor domain |
| nr | gi|695023404|ref|XP_009398871.1| | 0 | PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8RWS9|CNGC5_ARATH | 4.00E-150 | Probable cyclic nucleotide-gated ion channel 5 |
| trEMBL | tr|M0SSV0|M0SSV0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P28380_001} |
| TAIR | AT5G57940 | 3.00E-150 | cyclic nucleotide gated channel 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000206 | 371815 | 393912 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007854
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00520.30 | Ion_trans | 108 | 383 | 1.00E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05391 | CNGC | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006811 | Biological Process | ion transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0005216 | Molecular Function | ion channel activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.300 |
| SRR2545915 | Juvenile tuber | 4.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.180 |
| SRR5643514 | five period of Gastrodia elata | 2.530 | |
| SRR5643515 | five period of Gastrodia elata | 1.960 | |
| SRR5643524 | five period of Gastrodia elata | 2.240 | |
| SRR5643525 | five period of Gastrodia elata | 4.710 | |
| SRR5643528 | five period of Gastrodia elata | 2.580 | |
| SRR5643658 | five period of Gastrodia elata | 1.940 | |
| SRR5643659 | five period of Gastrodia elata | 1.600 | |
| SRR5643660 | five period of Gastrodia elata | 2.210 | |
| SRR5643661 | five period of Gastrodia elata | 2.180 | |
| SRR5643662 | five period of Gastrodia elata | 2.610 | |
| SRR5643663 | five period of Gastrodia elata | 2.460 | |
| SRR5643664 | five period of Gastrodia elata | 2.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.680 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.950 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.06 |
| Juven | Juvenile tuber | 5.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.94 | |
| Mother_Juven | Mother tuber of Juvenile | 6.32 |