Gene detail

Detail information of GWHGAAEX007859/evm.TU.scaffold_206.20

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1865	2.00E-152	Ubiquitin carboxyl-terminal hydrolase
nr	gi\|672191337\|ref\|XP_008775483.1\|	0	PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like [Phoenix dactylifera]
Swissprot	tr\|Q9FPS2\|UBP25_ARATH	2.00E-157	Ubiquitin carboxyl-terminal hydrolase 25
trEMBL	tr\|M0TZ42\|M0TZ42_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P10330_001}
TAIR	AT3G14400	2.00E-152	ubiquitin-specific protease 25

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000206	551100	592034	+

Transcript Sequence
>GWHTAAEX007859 GGTCAAGGTGGGAGGGACAATTTAGTGTGACGGCGGCGTCCCCGGACTCTCTTTTCTTCAACTCCCTCCTCTCCCGGCCACGGGACAGAAATCTTATTTCTCCTCTCTCCCTCGTCCTCCCTCTCCGACGCCTGGGCGGCACGAAGAACAAGGAAGCAAGCACCTGCAGCAAGAAAAGGCGGCGCTCGCTGCGCGCAGAGGTGATGCGATCGGATGAAGATTTGGAAGAGGAGGAGGCGGTGGTGGATACGGAGAAGCGTGCATGTTGATGATGGGTCTGCAAATGGCGTGGCAGAAGAGCGTTTCGGAGAGGCGGAGGACGCCTCTGGGTCTGAAGAACCTCGGAAATACTTGTTACCTCAACAGCGTCCTCCAGTGCTTGACCTACACCCCTCCGCTCGCTCAATTCTGCCTCTCTTCCGAGCACTCCTCTCTATGCAAGAAGCTGTTTGCGAATAAGGAGAGGGATTGTCCCTTCTGCATAATTGAGCGGCAGATCGCTCGTTCTCTGAATTTGGATGGCCATCTCGATGCCCCTTCGAAGATCCAGAAATGCTTAAACGTATTTGCAGAGCATTTTCGATGGGGGAGGCAGGAAGACGCGCACGAGTTCCTACGATACGTCATTGATGCTTGCCACAATACTTGCCTTAAGATACTCAAGAGGCGTTCGGCCTCTTGCAATGGAAGCGCTGTTAACGGCAATGGTTTTATCTCAAAGAAGGAAGAGGAGTCGGAAACTTGTACCATAATGAATCAGATTTTTGGGGGTTCGCTGCTTAGCCAAGTGAAATGCCTTTCCTGCAAAGGGGAGTCGAACAAAGATGATGAGATTATGGATATAAGTCTTGATCTCTATGAAAGCAACTCTCTCAGAGAAGCCCTAAGTAGATTCTTTCAAGCCGAGTGCCTTGATGGAAGCAATAAATATAACTGTGAGAGGTGTAAAAAATTATCTGTGGCCAAAAAGCAGATGTTCATGCTTCGAGCTCCAAATGTGCTTGTCATTCAACTCAAGAGATTTGAGGGCGTTCACGGTGGTAAGATTAACCGCAACATTGAATTTGAGGAGATGTTAGATCTATCAAATTATATGTACAAACCTACTCAGGAGTCAGAGCCCAAATACAATCTATTTGGGAGCATTGTGCACTCTGGATATTCACCTGAATCAGGGCATTACTATGCTTATATTAAGGATGCTTTTGATAGATGGTATTGCTGTAATGATGCTCATGTTTCACTTTCAAGCACCAAAGAGGTTTTGTCCGAAAAGGTATATATTTTGTTCTATTTGCTTTCTGATCAACATCAGAAGTCTGGCAAAAATGGTCCATCTTACAATGGATTGAAGCCCCCAGTTTTAAATCAAAATGACACATCGGCCAGTGAGAAGTCTGCTGAAACTGCAAAATCATTTGCAACTACAAATGCTTTACCAGTGCCCAAATATGGTACAATTTCGACAAATCATCAATTCAAATCCATTACTTCTAACAAGAATTTTGAGCCTCCTAGAGTGTTCTCTAATGGTTCTGAAAAGCTTGAGGTGCATTCTAATGGTAAAAGCAATGATGGCAAACAATCTCCTGCTGCAGAAAAGGCTAGTTTAGAGAAACCAGAGAGTACATATGGTGCAGATCATTCATCCGTTACTAGAAAAACTTCTGTCCTAGTGAAAAACCATGGTTTGCAGTGCTTATCAAATAGCAATGGAAGATGTAAGTCTCCATTAACTAATCCACATGAGAATAATGGTGGTTTTAAGTTTCCATCTGATAGCAAAGATTCTAGATTTGAACGTTCATCTGGTAGCATGCTAAATGGACAAAACTTTCTCAACTCATCCAAAAGAAAATTGCTTGATACTGATAAAACAAATGATTTGGGCTGTTCTGCTGAAAAATTTCATGCATTCTCAAGCAATGGGGCAGATCACTCTTCAGTGGAACTTCACATGTTTAAGGAAATTCTTGCTTCAGAGGCACGTACAGCTCTTCAATCATGTGATTGGCTTGGTAAGGTGCATGATTTCATGCACGCTAGGAAGAGATTATGCATACAAACCAGTGGTGGTTGCTTGAATGCTACTGAGTTAAAGGTAGAGCTGATAAATGCTGCTAGAGAGAATTTTATTCAAGATATTCCCGGATCATTAAAAGAGCGTCTCATTGAACTCTTAAAATCATTGAGTCAAAGCAATTCTTTTTTGGACATTTGAATTGCCAACGGCTATACTTTGGTGCTGAAGCAGAAAAGAAGAGAGAAAGGTGGCTGGATGAAAGGAACGTACCGCTCTCAATTTGCAAGTAAAGAAGAGTGTGCTGCCAGCTTCTCGAGTTCTCATTTTTTTCATTAAAGCTGCCCTGTTTTAATAAAAAATGGAAACCTGTATAGAAGAGATGACTTCTAAGGGGGCATAGCTGATTAAGATAGCGTGTGTGTAGTTAGCCCCTAGGTCATACATGTACATGCGCAATACCTAATATTGCCTTGAGTTATGAAATATGCTGAATAGAAATATAATCCCAAATTTTTAGTAAGCAAACAAATTGAATCTTTAATAATCATTTTGGC

Network for GWHGAAEX007859

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00443.28	UCH	23	344	4.20E-51

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process
GO:0016579	Biological Process	protein deubiquitination
GO:0036459	Molecular Function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.090
SRP064423	SRR2545915	Juvenile tuber	19.690
SRP108465	SRR5643513	five period of Gastrodia elata	14.840
	SRR5643514	five period of Gastrodia elata	14.140
	SRR5643515	five period of Gastrodia elata	13.590
	SRR5643524	five period of Gastrodia elata	14.140
	SRR5643525	five period of Gastrodia elata	12.100
	SRR5643528	five period of Gastrodia elata	15.140
	SRR5643658	five period of Gastrodia elata	12.290
	SRR5643659	five period of Gastrodia elata	17.740
	SRR5643660	five period of Gastrodia elata	18.540
	SRR5643661	five period of Gastrodia elata	17.980
	SRR5643662	five period of Gastrodia elata	17.690
	SRR5643663	five period of Gastrodia elata	15.780
	SRR5643664	five period of Gastrodia elata	15.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.600
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.970
SRP279888	Gastro	Gastrodia elata tuber	21.92
	Juven	Juvenile tuber	18.17
	Mother_Gastro	Mother tuber of Gastrodia elata	12.66
	Mother_Juven	Mother tuber of Juvenile	22.41