Gene detail

Detail information of GWHGAAEX007863/evm.TU.scaffold_206.25

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|374997146\|ref\|YP_004972645.1\|	3.00E-29	protein kinase family protein with PASTA domain [Desulfosporosinus orientis DSM 765]
KOG	KOG0581	0	Mitogen-activated protein kinase kinase (MAP2K)
nr	gi\|672143259\|ref\|XP_008795500.1\|	0	PREDICTED: mitogen-activated protein kinase kinase 1-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9FJV0\|M2K6_ARATH	0	Mitogen-activated protein kinase kinase 6
trEMBL	tr\|G8AA64\|G8AA64_GOSHI	0	Mitogen-activated protein kinase kinase 6 {ECO:0000313\|EMBL:ADR31547.1}
TAIR	AT5G56580	0	MAP kinase kinase 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000206	859140	868173	+

Transcript Sequence
>GWHTAAEX007863 GAAAAGCCCCGCAGCCTGTTCGTCCTGATTGCTCTTTATACACCTCGTAAAAGAATTACAGAGGAAAACCCTAGATCTGAGACGTGCTCGGAGGCCCTGAAGCATCATGAAGACGAAGAAGCCGCTGAGCCAGCTCATGCTCGCCGTGCCCTCTCAGGAGAAACCGGTGACTGATTTCTTGACGGCTAGTGGAACTTTTCAAGACGGGGATTTGCTACTCAATAAGACTGGGTTACGTTTAATTTCTGAAGAAAATAGCAGTCAGCCACCAGATGTTAAAGATATGGATATGCAATTTAATACGGAAGACTTTGAGACCGTTAAAGTTATTGGTAAAGGAAGCGGTGGCGTTGTTCAACTTGTCCGGCAAAAGTTTTTGGGGACCTTGTTTGCCTTGAAGTGTATTCAGATGAATATTCAAGAGACAGTTCGCAAGCAGATTGTCCAAGAGATAAAAATAAATCAAGCCTCACTGTGCCCTCATGTGGTTGTCTGCTACCATTCATTCTATCATAATGGAATTATATCTCTGGTCTTAGAATACATGGATCGGGGTTCTCTTGCTGATATAATAAGACAAGTCAAAACAATTCTAGAGCCTTATCTTGCAGTTCTATGCCAACAGGTTTTAAAAGGTCTAGTATATCTTCACCATGAAAGACACGTAATTCATAGGGATATAAAGCCTTCGAACTTGTTAGTGAACCACAAAGGTGAAGTAAAGATTACAGACTTTGGAGTTAGCGCCGTTCTTGCTAGTTCTATGGGCCAGAGGGATACATTTGTCGGCACATACAATTATATGGCACCTGAAAGGATTAGTGGGGGCTCATACGATTTTAAAAGTGATATCTGGAGCCTGGGTTTAGTTATTCTTGAGTGCGCTATAGGCTCTTTTCCGTATAGGCAAACTGAAAATGAAGATGGACCGCTGAGCTTTTATGAACTTCTAGAGACCATTGTGGAGGAACCACCGCCAAGTGCTCCAGAAGATCAGTTTTCGCCAGAGTTCTGTTCATTCATTTCTGCTTGTGTACAAAAGGAACCCCAGCAGAGGCAATCTTCTTTGGAACTTCTGAATCATCCCTTCATCAGGAAGTTCGAAGGCAAAGACATTGACTTGGGCATTCTTGTGGCCAGCTTGGATCCTCCTGTAAATTTATCTGCTTAGCTGCCCACCTCATCTTCCTTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX007863

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	69	329	2.20E-64

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE7

KEGG pathway

KO	Enzyme	pathway	mapID
K04368	MAP2K1, MEK1	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway	map04010
		MAPK signaling pathway - fly	map04013
		ErbB signaling pathway	map04012
		VEGF signaling pathway	map04370
		Apelin signaling pathway	map04371
		TNF signaling pathway	map04668
		HIF-1 signaling pathway	map04066
		FoxO signaling pathway	map04068
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		cGMP-PKG signaling pathway	map04022
		PI3K-Akt signaling pathway	map04151
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Oocyte meiosis	map04114
		Apoptosis	map04210
		Cellular senescence	map04218
		Focal adhesion	map04510
		Gap junction	map04540
		Signaling pathways regulating pluripotency of stem cells	map04550
		Regulation of actin cytoskeleton	map04810
		Toll-like receptor signaling pathway	map04620
		Natural killer cell mediated cytotoxicity	map04650
		T cell receptor signaling pathway	map04660
		B cell receptor signaling pathway	map04662
		Fc epsilon RI signaling pathway	map04664
		Fc gamma R-mediated phagocytosis	map04666
		Chemokine signaling pathway	map04062
		Insulin signaling pathway	map04910
		GnRH secretion	map04929
		GnRH signaling pathway	map04912
		Estrogen signaling pathway	map04915
		Progesterone-mediated oocyte maturation	map04914
		Prolactin signaling pathway	map04917
		Oxytocin signaling pathway	map04921
		Relaxin signaling pathway	map04926
		Thyroid hormone signaling pathway	map04919
		Melanogenesis	map04916
		Vascular smooth muscle contraction	map04270
		Cholinergic synapse	map04725
		Serotonergic synapse	map04726
		Long-term potentiation	map04720
		Long-term depression	map04730
		Neurotrophin signaling pathway	map04722
		Dorso-ventral axis formation	map04320
		Osteoclast differentiation	map04380
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.840
SRP064423	SRR2545915	Juvenile tuber	59.740
SRP108465	SRR5643513	five period of Gastrodia elata	52.000
	SRR5643514	five period of Gastrodia elata	53.420
	SRR5643515	five period of Gastrodia elata	51.180
	SRR5643524	five period of Gastrodia elata	56.140
	SRR5643525	five period of Gastrodia elata	82.020
	SRR5643528	five period of Gastrodia elata	87.840
	SRR5643658	five period of Gastrodia elata	79.670
	SRR5643659	five period of Gastrodia elata	53.730
	SRR5643660	five period of Gastrodia elata	54.220
	SRR5643661	five period of Gastrodia elata	48.540
	SRR5643662	five period of Gastrodia elata	63.700
	SRR5643663	five period of Gastrodia elata	49.380
	SRR5643664	five period of Gastrodia elata	48.280
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.910
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	48.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	43.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	52.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	52.000
SRP279888	Gastro	Gastrodia elata tuber	54.02
	Juven	Juvenile tuber	39.06
	Mother_Gastro	Mother tuber of Gastrodia elata	75.83
	Mother_Juven	Mother tuber of Juvenile	71.09