Detail information of GWHGAAEX007866/evm.TU.scaffold_206.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|94969187|ref|YP_591235.1| | 3.00E-150 | aromatic-L-amino-acid decarboxylase [Candidatus Koribacter versatilis Ellin345] |
| KOG | KOG0628 | 0 | Aromatic-L-amino-acid/L-histidine decarboxylase |
| nr | gi|720090665|ref|XP_010245171.1| | 0 | PREDICTED: tyrosine/DOPA decarboxylase 2-like [Nelumbo nucifera] |
| Swissprot | tr|P54769|TYDC2_PAPSO | 0 | Tyrosine decarboxylase |
| trEMBL | tr|Q000T5|Q000T5_ARICO | 0 | Tyrosine decarboxylase {ECO:0000313|EMBL:ABJ16446.1} |
| TAIR | AT2G20340 | 0 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000206 | 971829 | 974215 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007866
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00282.18 | Pyridoxal_deC | 57 | 429 | 1.70E-114 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006520 | Biological Process | cellular amino acid metabolic process |
| GO:0019752 | Biological Process | carboxylic acid metabolic process |
| GO:0016831 | Molecular Function | carboxy-lyase activity |
| GO:0030170 | Molecular Function | pyridoxal phosphate binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.110 |
| SRR2545915 | Juvenile tuber | 18.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 146.000 |
| SRR5643514 | five period of Gastrodia elata | 19.750 | |
| SRR5643515 | five period of Gastrodia elata | 319.810 | |
| SRR5643524 | five period of Gastrodia elata | 97.060 | |
| SRR5643525 | five period of Gastrodia elata | 1284.790 | |
| SRR5643528 | five period of Gastrodia elata | 1530.120 | |
| SRR5643658 | five period of Gastrodia elata | 2054.930 | |
| SRR5643659 | five period of Gastrodia elata | 85.190 | |
| SRR5643660 | five period of Gastrodia elata | 17.520 | |
| SRR5643661 | five period of Gastrodia elata | 40.850 | |
| SRR5643662 | five period of Gastrodia elata | 131.860 | |
| SRR5643663 | five period of Gastrodia elata | 45.820 | |
| SRR5643664 | five period of Gastrodia elata | 32.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.230 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.320 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.850 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.67 |
| Juven | Juvenile tuber | 1.98 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 280.75 | |
| Mother_Juven | Mother tuber of Juvenile | 358.46 |