Detail information of GWHGAAEX007868/evm.TU.scaffold_206.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672141363|ref|XP_008794509.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g21065-like [Phoenix dactylifera] |
| Swissprot | tr|A8MQA3|PP330_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g21065 |
| trEMBL | tr|K4A1X5|K4A1X5_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si032871m} |
| TAIR | AT4G21070_1 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000206 | 994026 | 996848 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007868
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 162 | 188 | 0.006 |
| PF01535.19 | PPR | 190 | 216 | 0.00079 |
| PF01535.19 | PPR | 264 | 286 | 0.27 |
| PF01535.19 | PPR | 292 | 322 | 9.80E-05 |
| PF14432.5 | DYW_deaminase | 463 | 587 | 1.90E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.780 |
| SRR2545915 | Juvenile tuber | 0.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.960 |
| SRR5643514 | five period of Gastrodia elata | 2.120 | |
| SRR5643515 | five period of Gastrodia elata | 4.990 | |
| SRR5643524 | five period of Gastrodia elata | 2.520 | |
| SRR5643525 | five period of Gastrodia elata | 3.310 | |
| SRR5643528 | five period of Gastrodia elata | 7.700 | |
| SRR5643658 | five period of Gastrodia elata | 2.850 | |
| SRR5643659 | five period of Gastrodia elata | 3.200 | |
| SRR5643660 | five period of Gastrodia elata | 3.690 | |
| SRR5643661 | five period of Gastrodia elata | 4.140 | |
| SRR5643662 | five period of Gastrodia elata | 4.350 | |
| SRR5643663 | five period of Gastrodia elata | 3.810 | |
| SRR5643664 | five period of Gastrodia elata | 3.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.010 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.49 |
| Juven | Juvenile tuber | 2.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.29 | |
| Mother_Juven | Mother tuber of Juvenile | 4.56 |