Detail information of GWHGAAEX007873/evm.TU.scaffold_206.37
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|340785392|ref|YP_004750857.1| | 3.00E-21 | ATP-dependent RNA helicase RhlE [Collimonas fungivorans Ter331] |
| KOG | KOG0333 | 0 | U5 snRNP-like RNA helicase subunit |
| nr | gi|743766510|ref|XP_010913496.1| | 0 | PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q6H601|RH22_ORYSJ | 0 | DEAD-box ATP-dependent RNA helicase 22 |
| trEMBL | tr|D7TNM5|D7TNM5_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI32098.3} |
| TAIR | AT1G59990 | 0 | DEA(D/H)-box RNA helicase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000206 | 1116201 | 1149052 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007873
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 96 | 262 | 3.60E-25 |
| PF00271.30 | Helicase_C | 411 | 507 | 9.60E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.700 |
| SRR2545915 | Juvenile tuber | 11.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.700 |
| SRR5643514 | five period of Gastrodia elata | 7.740 | |
| SRR5643515 | five period of Gastrodia elata | 7.050 | |
| SRR5643524 | five period of Gastrodia elata | 7.430 | |
| SRR5643525 | five period of Gastrodia elata | 6.710 | |
| SRR5643528 | five period of Gastrodia elata | 5.320 | |
| SRR5643658 | five period of Gastrodia elata | 6.420 | |
| SRR5643659 | five period of Gastrodia elata | 11.110 | |
| SRR5643660 | five period of Gastrodia elata | 11.860 | |
| SRR5643661 | five period of Gastrodia elata | 10.120 | |
| SRR5643662 | five period of Gastrodia elata | 9.620 | |
| SRR5643663 | five period of Gastrodia elata | 9.220 | |
| SRR5643664 | five period of Gastrodia elata | 8.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.990 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.290 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.290 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.63 |
| Juven | Juvenile tuber | 11.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.69 | |
| Mother_Juven | Mother tuber of Juvenile | 6.09 |