Gene detail

Detail information of GWHGAAEX007875/evm.TU.scaffold_206.39

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1087	2.00E-78	Cytosolic sorting protein GGA2/TOM1
nr	gi\|695026944\|ref\|XP_009400790.1\|	1.43E-103	PREDICTED: TOM1-like protein 1 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0SYG7\|M0SYG7_MUSAM	5.00E-104	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P14380_001}
TAIR	AT2G38410	2.00E-78	ENTH/VHS/GAT family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000206	1238078	1248753	+

Transcript Sequence
>GWHTAAEX007875 CAAAATTTTAGGGCGCCGAAAAAATTGACGGGTTTCGAATCTCTATATATATACAGAGCCGCGAGTTCGTTTTGCTCGAGTAGGGTTATCTAGGGTTAGCTGCTGGCGCGAAAATGGCGCCGTCTCTGCCGTCGATCCTATCGAGGGCGTCATCTTCGCCGTCAGGAAGAGTGGGAAAGGCGACGAGCCGCACGCTTATCGGGCCGGACTGGATGTCCAATATGGATATCTGCAACTCCGCAAACTCCAATCCATGGCAGGCAAAAGCTTTTGTCAAAGCTGTGAAGAAGCGCTTACAGAATAAGAACTCCAAGGTTCAGTTTCTTGCTTTGATGCTATTAGAGGAAATGACAAAGAATTGCGGTGATTTTGTGCATTTTCATGTTGTTGATGTTGGGATCTTGCAAGAGATGATTAAGATTGTCAGAAATACAAAAAATATGCAGGTGAGGGAAAGAATTTTGATGCTGCTGGAATATTGGCAGGAGGCATTTGGTGGCTCTGATGGAAAGTACCCACAATACTACTACACTTTTGCTGAGCTAAAGAGGTCTGGAGTTCGGTTCCCGCAGATCCGAAGAGAGGGCGATCCAACACATGCCACTATTGATCCGGCGGCTGATATGCCTCAAATAAGCTACGGAATGCCCAGCAATTCAATTGAAAAATTCGATGAAGTAATGGGTTATGAGAAGCACGATTTCAGTTCATCAGATTTGGATGATATACAAAGTGCTATGGACTTGTTCAACAATATGCTGCAGAATGTAAGCCTTACAGATTATGTGGCAATCAAAGATGAAGTTATCATAGATCTTGTCGATCAGTGTCATATAAGCCAAAAGAAGCTCATGCACCTGATTAACTCAACAGAGAATGATGACCTGTTGCGCCAAGCTTGTGCCATGAATGACAGCTTACAAACCCTACTTTCAAAATATGATGCATTGGTTTATGAGTCATCTTTGCTGCCCGAAACGTCGGAGGCATCATCCTTTGATGCAAAGACTCAACAATTTGACAACAAGGAGGAAAATGAAGACGACAATGATGGATTTTCTATATTAGCTAAAAGGAATTCAGCCCTTAAATCAACCAAAATCCAAGAATCCTCCCCAAGCAAGAATGTTGTGAGCACTGAAATACCGATAACAACCGCAGCCAAGGAGGAAGAATCCAACCCAAGCAATGCTCTAATCACATTTGATCCCACAGCCGCATTCGATGATTCTTCCAAGAAGGAAGGACAAGACATGATTCAACTCCTAAGCCTCACTCAAACGAATCCAAATCCATTTTCAGATTATAACTATCTTCAGCCTAACATTTCAAACAATAAATATGCCACTTATAACAGCTCTGCTGGGCCTGATAGCCTGAGCTCAAACCCCTTTATGTCTCCGACTTATGCTTGGAACCAAAGCTCGGCATCACAGCCTGGTGCGGCTTATGGTTCCAAAGAAACCCGGTTAAGTGCTGACCTAAAGCTAGCAGGGCCTTCTGGTGCTCCAAAGACTTACATGCCTGACAATCTGTTTGAGGATTTGATAAAGTTGAGAAATTCTGATGGGAGTCTGAAGTCAAGAGATGCATCAAGTCTTTGGGGATTTACAAGGCAAGGCATGACGAGTGTTAACTGATTTCTGTAGTGTTTATGTATATCATATGAAGTACATGTTTTCTTTCCATTTTTTGTAATCATATCATAGTTTGTATATGTTACGACACAACCAAGCATCAAATGAAACATATATTACAAGGAAAATTGTCATTCTGCCATTTCTCATGAAAGCAATAGAATACTTTAATCAGAGGATTTTTTATTGAAATTTTTATTTTTGCTAATTGAAATGTTTATTTTTGCTATGAAGGCTGTTCAGCATCCATTCATTTGTATGTTTTTTATTTCATTCTTCCTATTGCTTTGATTGACCGATATTTTTTTTTATGAAAGCACATGTTGAAATTATAGAAGAATATTATTCTACAAAAATTAAGTCAAAAGAACTCTGATATGAAGTCAATATAACCTTTTGTTACACAAAAAGAACAAAAATATAAGAATTGGACCTAGAATATATGAAATGAAATTAGAGCCATTCAATGTTTTAAATTATGCAAGGAGGGCTGTAAGAGAAAGAGTGCTCACATATTTCTGTACAAATAGTATTGTACTTTATCTCTCTAACTTTTAAGAGAGCAGTATCGCATCTATTGAATTGAAAAAAGGACAGAAGCCGTAATTAGAATTCTCATTACACATGGATGAGGACAGTGCATGTCTATATATATAGCGATACATTGATGTGATCCGTGATGTGGTTACTTAATATAAGCGCTAGATAGATGGTTATCTTGTAATATCCCCTCATAAGATGACGGCGGAGTTTTGAACCGCCAGCTTATCTCGTAGGTAATTGAAGGGATGAGATCAGAAGGGGTTTAGTGAGAATGTCAGTAATTTGCTTGGATGACGGCATGTAGTCGATTGAGATTTCATTGTTTTTCACATTATCATGAATAAAGTGACAATCCACTTGGACATGTTTTGTACAAGCAAAAAATAGTGGGTTATTGGTGAGGGGGATTGCAGACGTGTTGTCACAGTAGATAGTTGTTTGTTGCTAGGGATGTTGAAGTTCTTGGAGTAGTCTTCGTAGCCATAGGCTATTTGTAACTGTTGAGGCAAGCGCTTTGTATTCGGCTTCGGTGGAGGATCGTGCGACAGTGTGTTGTTTCTTTGCACTCAAGTTGATTAGTGTTTGGCCGAGAAACACAGAATCTGGTGGTGAACTTTATGTCGGTGGAGTCACCTGCCTAGTCTGCGTCTGAGTGAGCATGAAGCTCAATAGTGGTGGGAGTGATGGAGAGCCTGAATTGAAGGCGGCCGACAAGTTGTATGTAGATCTGTGGATTGGATAACGGTTCCAATGTGGTAGTGGAGTTGTCGACTGGACTAGTGCTGGTTTGCAGTTTGACATTCCTGCATCAGGAAGAATCTGTATTGCATATGTTGTCTAAGACAAATGTAAGCCATTGGAAGTTGGTTGGATAGAGATCTGAGAAGTTGAGAAGGGGAGCCAATGGTTTTCATCTTGAAGCGATCTTCCATTGTTTGAATTTTTGTTCAAGGAAATGTAGGATTGGTGTTGGTGAGGAGATCATTGACATATATTAGTAAATAGGCACAGTTGTGGGAAGTGTTGTAGTTGAGAAATGAATGATCACCTTTGCTTTGAGTGAAGCCTTTTGACATGAGAAATTCAGTGAGAATAAAGAACTATTGACGAGGAGATTGATTTAGCCCATTTAGAGCTTTTTTGAGTTTGCATACGCAGTGAGGCTTATCGGATTGATGAAGTGAGGTTGTTTAATGTATACAATTTCATTCAATGAGCCATGGAGAAAGGACTTTGATACGT

Network for GWHGAAEX007875

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00790.18	VHS	18	140	3.10E-24
PF03127.13	GAT	207	280	1.10E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	Biological Process	intracellular protein transport

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.300
SRP064423	SRR2545915	Juvenile tuber	16.640
SRP108465	SRR5643513	five period of Gastrodia elata	3.680
	SRR5643514	five period of Gastrodia elata	3.620
	SRR5643515	five period of Gastrodia elata	12.590
	SRR5643524	five period of Gastrodia elata	7.960
	SRR5643525	five period of Gastrodia elata	2.390
	SRR5643528	five period of Gastrodia elata	33.310
	SRR5643658	five period of Gastrodia elata	5.130
	SRR5643659	five period of Gastrodia elata	5.650
	SRR5643660	five period of Gastrodia elata	2.810
	SRR5643661	five period of Gastrodia elata	3.180
	SRR5643662	five period of Gastrodia elata	2.740
	SRR5643663	five period of Gastrodia elata	0.820
	SRR5643664	five period of Gastrodia elata	0.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.820
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.060
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.360
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.520
SRP279888	Gastro	Gastrodia elata tuber	7.71
	Juven	Juvenile tuber	4.27
	Mother_Gastro	Mother tuber of Gastrodia elata	134.16
	Mother_Juven	Mother tuber of Juvenile	265.58