Detail information of GWHGAAEX007876/evm.TU.scaffold_206.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|334139799|ref|YP_004532997.1| | 6.00E-12 | di-tripeptide ABC transporter-like protein [Novosphingobium sp. PP1Y] |
| KOG | KOG1237 | 2.00E-99 | H+/oligopeptide symporter |
| nr | gi|727499884|ref|XP_010425994.1| | 5.14E-104 | PREDICTED: protein NRT1/ PTR FAMILY 2.3-like [Camelina sativa] |
| Swissprot | tr|Q9M173|PTR41_ARATH | 7.00E-100 | Protein NRT1/ PTR FAMILY 2.4 |
| trEMBL | tr|M5X3X9|M5X3X9_PRUPE | 2.00E-96 | Uncharacterized protein {ECO:0000313|EMBL:EMJ20624.1} |
| TAIR | AT3G45700 | 2.00E-99 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000206 | 1252458 | 1254904 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007876
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00854.20 | PTR2 | 60 | 205 | 2.00E-20 |
| PF00854.20 | PTR2 | 210 | 386 | 8.00E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.520 |
| SRR2545915 | Juvenile tuber | 7.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.480 |
| SRR5643514 | five period of Gastrodia elata | 44.410 | |
| SRR5643515 | five period of Gastrodia elata | 64.870 | |
| SRR5643524 | five period of Gastrodia elata | 52.430 | |
| SRR5643525 | five period of Gastrodia elata | 24.660 | |
| SRR5643528 | five period of Gastrodia elata | 63.740 | |
| SRR5643658 | five period of Gastrodia elata | 49.410 | |
| SRR5643659 | five period of Gastrodia elata | 12.000 | |
| SRR5643660 | five period of Gastrodia elata | 9.200 | |
| SRR5643661 | five period of Gastrodia elata | 11.510 | |
| SRR5643662 | five period of Gastrodia elata | 17.260 | |
| SRR5643663 | five period of Gastrodia elata | 13.030 | |
| SRR5643664 | five period of Gastrodia elata | 6.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 31.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.41 |
| Juven | Juvenile tuber | 23.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.14 | |
| Mother_Juven | Mother tuber of Juvenile | 64.27 |