Detail information of GWHGAAEX007878/evm.TU.scaffold_206.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|521467057|ref|YP_008154420.1| | 2.00E-26 | hypothetical protein SCE1572_40290 [Sorangium cellulosum So0157-2] |
| KOG | KOG1072 | 4.00E-96 | FOG: Kelch repeat |
| nr | gi|743782053|ref|XP_010921050.1| | 0 | PREDICTED: actin-binding protein IPP-like [Elaeis guineensis] |
| Swissprot | tr|P37707|B2_DAUCA | 3.00E-26 | B2 protein |
| trEMBL | tr|I1HCB1|I1HCB1_BRADI | 2.00E-175 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G04040.1} |
| TAIR | AT5G01660_2 | 4.00E-96 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000206 | 1306110 | 1344452 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007878
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF10539.8 | Dev_Cell_Death | 35 | 163 | 1.40E-48 |
| PF01344.24 | Kelch_1 | 512 | 556 | 4.20E-11 |
| PF01344.24 | Kelch_1 | 564 | 598 | 2.60E-07 |
| PF01344.24 | Kelch_1 | 607 | 650 | 6.20E-08 |
| PF01344.24 | Kelch_1 | 653 | 697 | 2.30E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.550 |
| SRR2545915 | Juvenile tuber | 2.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.670 |
| SRR5643514 | five period of Gastrodia elata | 2.210 | |
| SRR5643515 | five period of Gastrodia elata | 2.000 | |
| SRR5643524 | five period of Gastrodia elata | 1.740 | |
| SRR5643525 | five period of Gastrodia elata | 2.570 | |
| SRR5643528 | five period of Gastrodia elata | 4.010 | |
| SRR5643658 | five period of Gastrodia elata | 2.780 | |
| SRR5643659 | five period of Gastrodia elata | 3.800 | |
| SRR5643660 | five period of Gastrodia elata | 3.280 | |
| SRR5643661 | five period of Gastrodia elata | 3.730 | |
| SRR5643662 | five period of Gastrodia elata | 4.540 | |
| SRR5643663 | five period of Gastrodia elata | 4.180 | |
| SRR5643664 | five period of Gastrodia elata | 4.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.14 |
| Juven | Juvenile tuber | 1.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.39 | |
| Mother_Juven | Mother tuber of Juvenile | 2.35 |