Detail information of GWHGAAEX007879/evm.TU.scaffold_206.44
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336253975|ref|YP_004597082.1| | 5.00E-19 | Catalase-peroxidase [Halopiger xanaduensis SH-6] |
| nr | gi|62910196|gb|AAY21068.1| | 2.10E-159 | cytosolic ascorbate peroxidase [Capsicum annuum] |
| Swissprot | tr|Q05431|APX1_ARATH | 1.00E-153 | L-ascorbate peroxidase 1, cytosolic |
| trEMBL | tr|Q4ZJK2|Q4ZJK2_CAPAN | 8.00E-160 | Cytosolic ascorbate peroxidase {ECO:0000313|EMBL:AAY21068.1} |
| TAIR | AT1G07890 | 5.00E-153 | ascorbate peroxidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000206 | 1345717 | 1351414 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007879
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module5 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00141.22 | peroxidase | 27 | 226 | 2.00E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00434 | E1.11.1.11 | Metabolic pathways | map01100 |
| Ascorbate and aldarate metabolism | map00053 | ||
| Glutathione metabolism | map00480 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006979 | Biological Process | response to oxidative stress |
| GO:0004601 | Molecular Function | peroxidase activity |
| GO:0020037 | Molecular Function | heme binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 89.870 |
| SRR2545915 | Juvenile tuber | 131.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 335.640 |
| SRR5643514 | five period of Gastrodia elata | 472.110 | |
| SRR5643515 | five period of Gastrodia elata | 333.010 | |
| SRR5643524 | five period of Gastrodia elata | 467.800 | |
| SRR5643525 | five period of Gastrodia elata | 88.010 | |
| SRR5643528 | five period of Gastrodia elata | 72.760 | |
| SRR5643658 | five period of Gastrodia elata | 47.130 | |
| SRR5643659 | five period of Gastrodia elata | 150.420 | |
| SRR5643660 | five period of Gastrodia elata | 151.750 | |
| SRR5643661 | five period of Gastrodia elata | 178.740 | |
| SRR5643662 | five period of Gastrodia elata | 105.630 | |
| SRR5643663 | five period of Gastrodia elata | 110.250 | |
| SRR5643664 | five period of Gastrodia elata | 122.170 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 206.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 217.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 245.780 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 171.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 101.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 77.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 143.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 109.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 231.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 181.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 416.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 416.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 133.57 |
| Juven | Juvenile tuber | 332.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 139.50 | |
| Mother_Juven | Mother tuber of Juvenile | 234.49 |