Detail information of GWHGAAEX007880/evm.TU.scaffold_206.45
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502744|ref|YP_001958461.1| | 5.00E-25 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| nr | gi|672178231|ref|XP_008809243.1| | 0 | PREDICTED: probable receptor protein kinase TMK1 [Phoenix dactylifera] |
| Swissprot | tr|P43298|TMK1_ARATH | 0 | Probable receptor protein kinase TMK1 (Precursor) |
| trEMBL | tr|M5VTP4|M5VTP4_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ04431.1} |
| TAIR | AT1G66150 | 0 | transmembrane kinase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000206 | 1351417 | 1356675 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007880
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 29 | 67 | 0.0053 |
| PF08263.11 | LRRNT_2 | 309 | 343 | 0.0018 |
| PF00069.24 | Pkinase | 569 | 842 | 2.50E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-IX |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.550 |
| SRR2545915 | Juvenile tuber | 2.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.280 |
| SRR5643514 | five period of Gastrodia elata | 0.970 | |
| SRR5643515 | five period of Gastrodia elata | 1.390 | |
| SRR5643524 | five period of Gastrodia elata | 0.650 | |
| SRR5643525 | five period of Gastrodia elata | 2.380 | |
| SRR5643528 | five period of Gastrodia elata | 1.570 | |
| SRR5643658 | five period of Gastrodia elata | 2.060 | |
| SRR5643659 | five period of Gastrodia elata | 2.730 | |
| SRR5643660 | five period of Gastrodia elata | 3.980 | |
| SRR5643661 | five period of Gastrodia elata | 3.670 | |
| SRR5643662 | five period of Gastrodia elata | 4.490 | |
| SRR5643663 | five period of Gastrodia elata | 4.710 | |
| SRR5643664 | five period of Gastrodia elata | 4.380 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.65 |
| Juven | Juvenile tuber | 2.92 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.56 | |
| Mother_Juven | Mother tuber of Juvenile | 2.23 |