Gene detail

Detail information of GWHGAAEX007882/evm.TU.scaffold_206.47

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0891	1.00E-17	DNA-dependent protein kinase
nr	gi\|695014878\|ref\|XP_009394284.1\|	0	PREDICTED: serine/threonine-protein kinase SMG1-like isoform X2 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0SJ91\|M0SJ91_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P30770_001}
TAIR	7290761	1.00E-17	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000206	1404979	1408866	+

Transcript Sequence
>GWHTAAEX007882 ATGATGCCGTGCAGGTCACATGGAGTTTGTCACGCAGCAGCGATGTCTTATGCTTCTCTGTGTGCTGCATTGGCTTCTTCCAACCATCTCCATGTTCATGTTCATAGGCTGGTCGATAGGTTTCTTTCTTGGGCTCTGCCGCTGCTCCGGGACTTACCCGTCACAAATGGCTCGGCGGAATTGGCGCTGATTAGCATCGGGGAATTCCTCAGCGCTGGGGATGCAGCGAGCGTCGAGAGATACGTTTCATCCATTCTCAAAGCTTGTCAGGAGCTGCTTGAGGATGAGAGAACCTCACTAAATTTGCTGCACCAGCTTCTGAGTATTCTGACTTTGATCTCTTTGAAGTTTTTTCATTGTTTCCAGCCCCATTTCATCGATATTGTGGATTTGCTACTTGGTTGGGCACTTATGCCGGACCTCTCTGATTCTGGCAGATGCTTGCTTACGGACAGTTTCTTACAGTTTCGGAAGCATTGGCTAAGCAATTTGCAGTTTTCTTTAGGACTGCTATCTAAGCTTTTGGGTGACGCAGAAGCATTGATACATGATGCAAGTGTAGAGGTCAAGTCACAGTTTGGAAGGTTGCTTTCTCTTTTCTCTTGTTTCTCCACAATTTTGCAGGCGACTGCTGATGGTGTATTGGAGATGAATCTCCTTGGACAGATAAGTGAACCGCTTGAAAATCTGACTCCCCAGTTGCTGAGATGTACATTGATGTTTGGAAGGAAATTTGGATGGTCTAAATGGACGGGGGGATCTTGGAAATGTTTGATTCTTGTGGCTGAAATGCTAAATGAGAATTTTTCTCAGTTTTATCCTCTGGCTATTGATATATTTTTTCAGAGCTTGAACCTCGTTCCTTCCAACCAGGTGCTTGGTTTCCTGAAGACAAATTTACAGCTGTTATTTATTCAAAAGACTGGCCTCCTGTCTTCATCAGTGCAGATGCTGCTACAATTTCAGTCGCCTTTGTCTCATTTACGGCTGCATCCAAATCATTCTGTTGTCGCAAGCACAGCTGCTACCTACCTTTACTTTCTTCAGCATTGTTGCAATGACATAGTTTCTCAAGCAATCACCTCCTTGTTTGAAGAACTGGAGCTATTGAAAAGAAAACTTGCAGAACTACGTCAACCAGCTTTAGACTCTTGTGTAGTTCAGGTGGAAGCTGGAAATAATGGCATTCTCAAGTTTAACTTAAGTTATGAAAAACAGTATTCGGAGCTTGATTTACTTTCCTTGATTAAATTTGATTTGAAGGTGATACATTGTTTACTGCCATTTGATGGTGCTGGAGGTTTAGCAAACCGAGTTTTCAATGATGTTGCTAAAAAGGATTTGTTGTCTAGAGTAGTATCTTTTATTCTCAACAAGTTTGATCCTTTTCAATTCCCCATCGAGGGTCTCCATGAGTTGCAAACCTTTGTTATCAGGACATTATACAAGTTCAGCGAATCTGAATTCCTAGTTAAATTTAATGACACCATAAAATTTGTGAATAACGCTTCTACTAATTTGAGAGCACAAGATCAACCAAATGTAGAGGCCAGAAATAAGCTGTATTGTCTGACTTTCAAGTTTTTGAGCAAATTCAGTGGAATTATGGCTAGAGCTCTAGATGTTACTTCGCCTTTGATTGTTAAAGTGGAGTCCCTAGGCTGGATTAGTTCATTTAGTCAGGTGATTGTAGCTACAAAAGAAAATAATCTGTTGGTAAGATCTTATAGAGAACCATATCAAAATGCAACTGTCAGTACATATTTACTCTTGCGCATTCTGGATGCAGCATTTGATATGGAACTGAAGGTGAGATCTCATGTTGCTCCTGTCCTAGAGCTCCTCCTGGAGGCCGGGCTTATTCATCCTGAGAACTTTTACGTTGTCTCAGAAGTTGTTCTCTGCAAACTTAGTGATTCAGACGTGACTGTAAAAAATGCATTTGGGCGTCTAATTTCTGTTGCAGCACCTGCTATTCTCTATATGCACGGCATTACTGATTTGGGATATTATTGCAAGCTGAAGCCTAATGCTAAAACTTATAGGTACTACCTTAACTGGAAGCAAGAGCTTGCTTTAAGGCAGATGCCTCAGAAACTGCATTCTCAGCAGCTTGTTTCTGTTTTGAGTTATATTTCCCAACGATGGAAGGTGCCTCTTTCTTCTTGGATTCAACGATTAGTCTTCAGTTGCCATGGAAGGAAAGATGGGATTCCTAGTAAAGAAGAAGTACTTGGAGAGCTTGAATCGAGTGATATATATAGAAGCGCTAATGCTGAAGAATTAATTCTTAAGAAGATATGTCCAATAAGTAATCTTGCTGCTATATGGTGGTCCATACATGAAGCTGCCAGGTTCTGCATAAATCTACGTCTTCGAACCAACCTGGGTAGTCCAACACAGACATTTGCTGCATTGGAGCGGATGCTTTTAGAAATACCAAATATCTCACAGTTTGATTTTGAGCAGAGTGAAGGCCGGTATCTGGGCTCATCTAATTTCCACTTGTTACCAATGAGAATGCTTCTAGATTTTGTTGAGGCCCTTAAGAAAAATGCATACAATGCTTTCGAAGGTTCCGCTGTTCTACCGCAATCGAGTCGACAAAGTTACTTGTTTTTTAGAGCAAACAAGAAAGTTTGCGAGGAATGGTTCTCACGAATTTGTGAGCCCATGTTAAATGCTTGCGTGGCTCTCAATTGTCATGATGCAACGTTTTATTACTGCACAGCACGACTGCTGGATCTTAAAAACCTGGCAGCTTCAGCTTTCAAGGACAAGTCAGAAAAATTTCAGGACATGAGAGTTAAAATTGCTGATGACGTACTGAAAGTGCTCCAATATGCATCGCTAGCTTTATGTAAGAGTCATGAGACTGAGGCTTTGATTGGTCTGCAGAAATGGGCTGGGATGACATTTTCTTCGTTGTTTATGGAAAGCACTCATCTCATCTCTAATACTAATGAAAATGACATGCATTTTTCTTGGATGACTGGACTTGCATATAAGGCACAAGGTCAGTACGAGAAGGCTGCTGCACACTTCTCTCACTTGCTTCAATCTGATGACGCTCTTAGTTCCATGGGTTCTGATGGAATCCAGTTTATTATTGCTCAAGCTATTGAGTGCTATACATCTCTTTCTGATTGGAATTCCTTGGAAAGTTGGCTTTCTGAGCTGCAGATGCTTCGTTCTTTGCATGCTGGCAAACCATATTCTGGTGCTCTTACTGCTGCTGGAAATGAAATGAATGCGATCCATGCTTTAGCTCGTTTTGATGAAGGTGATGCCCAAGCAGCATGGGGCTATCTTGACTTGACACCTAAAAGCAGCTGCCAGCTTTCCCTTAATCCTAGTGTAGCTCTTGAGAGGAGTGAACAAATGCTTTTACGGTCAATGCTTCAAATGGAAGGTGACACTGATAAAGTGCATGAGAATCTGGATAAGGCCAAAATGATGTTAGATGAAGCCTTATCCTGTGTTCCACTTGATGGGTTAGCTGAGGCCGCTGCTGTTTCTGTTCAACTTCATTGTGTTAATGCTTTGGAAGAATGTAAGATATCAAATGGCCAGCAAGTGCCATCAATACTTGCCTCAATGGCTCGGTCACTGCATTCTCCAATCTGCCGAATTAATCAAGATAGTAGCTTATGGATGAAAATTTTTCGAATCTATCATATTATCATACCTGATTCTTATGTTACAGTTCTTTTTGGTCATAGAATGCTTAGTTTAGCTCGGAAACAAAACAATTTCAGGTTGGCTGACCGTTTAAACAAGTACTTACAGGAACATCCTTTGTCTGATCATCGGCATGCTGAGTTTCTTGCATCAAATCTAGAGTATGAAGGAATCCTACTTAAGCATGCAGTAGGGAGGGAAGACTGA

Network for GWHGAAEX007882

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15785.4	SMG1	592	1096	1.90E-41

Protein Sequence

>GWHPAAEX007882
MMPCRSHGVCHAAAMSYASLCAALASSNHLHVHVHRLVDRFLSWALPLLRDLPVTNGSAELALISIGEFLSAGDAASVERYVSSILKACQELLEDERTSLNLLHQLLSILTLISLKFFHCFQPHFIDIVDLLLGWALMPDLSDSGRCLLTDSFLQFRKHWLSNLQFSLGLLSKLLGDAEALIHDASVEVKSQFGRLLSLFSCFSTILQATADGVLEMNLLGQISEPLENLTPQLLRCTLMFGRKFGWSKWTGGSWKCLILVAEMLNENFSQFYPLAIDIFFQSLNLVPSNQVLGFLKTNLQLLFIQKTGLLSSSVQMLLQFQSPLSHLRLHPNHSVVASTAATYLYFLQHCCNDIVSQAITSLFEELELLKRKLAELRQPALDSCVVQVEAGNNGILKFNLSYEKQYSELDLLSLIKFDLKVIHCLLPFDGAGGLANRVFNDVAKKDLLSRVVSFILNKFDPFQFPIEGLHELQTFVIRTLYKFSESEFLVKFNDTIKFVNNASTNLRAQDQPNVEARNKLYCLTFKFLSKFSGIMARALDVTSPLIVKVESLGWISSFSQVIVATKENNLLVRSYREPYQNATVSTYLLLRILDAAFDMELKVRSHVAPVLELLLEAGLIHPENFYVVSEVVLCKLSDSDVTVKNAFGRLISVAAPAILYMHGITDLGYYCKLKPNAKTYRYYLNWKQELALRQMPQKLHSQQLVSVLSYISQRWKVPLSSWIQRLVFSCHGRKDGIPSKEEVLGELESSDIYRSANAEELILKKICPISNLAAIWWSIHEAARFCINLRLRTNLGSPTQTFAALERMLLEIPNISQFDFEQSEGRYLGSSNFHLLPMRMLLDFVEALKKNAYNAFEGSAVLPQSSRQSYLFFRANKKVCEEWFSRICEPMLNACVALNCHDATFYYCTARLLDLKNLAASAFKDKSEKFQDMRVKIADDVLKVLQYASLALCKSHETEALIGLQKWAGMTFSSLFMESTHLISNTNENDMHFSWMTGLAYKAQGQYEKAAAHFSHLLQSDDALSSMGSDGIQFIIAQAIECYTSLSDWNSLESWLSELQMLRSLHAGKPYSGALTAAGNEMNAIHALARFDEGDAQAAWGYLDLTPKSSCQLSLNPSVALERSEQMLLRSMLQMEGDTDKVHENLDKAKMMLDEALSCVPLDGLAEAAAVSVQLHCVNALEECKISNGQQVPSILASMARSLHSPICRINQDSSLWMKIFRIYHIIIPDSYVTVLFGHRMLSLARKQNNFRLADRLNKYLQEHPLSDHRHAEFLASNLEYEGILLKHAVGRED

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08873	SMG1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0000184	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0016310	Biological Process	phosphorylation
GO:0004674	Molecular Function	protein serine/threonine kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.650
SRP064423	SRR2545915	Juvenile tuber	1.420
SRP108465	SRR5643513	five period of Gastrodia elata	0.860
	SRR5643514	five period of Gastrodia elata	1.120
	SRR5643515	five period of Gastrodia elata	1.480
	SRR5643524	five period of Gastrodia elata	0.950
	SRR5643525	five period of Gastrodia elata	1.140
	SRR5643528	five period of Gastrodia elata	0.500
	SRR5643658	five period of Gastrodia elata	0.870
	SRR5643659	five period of Gastrodia elata	1.350
	SRR5643660	five period of Gastrodia elata	1.790
	SRR5643661	five period of Gastrodia elata	1.340
	SRR5643662	five period of Gastrodia elata	1.080
	SRR5643663	five period of Gastrodia elata	1.130
	SRR5643664	five period of Gastrodia elata	1.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.700
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.820
SRP279888	Gastro	Gastrodia elata tuber	1.22
	Juven	Juvenile tuber	3.49
	Mother_Gastro	Mother tuber of Gastrodia elata	0.82
	Mother_Juven	Mother tuber of Juvenile	2.99