Detail information of GWHGAAEX007884/evm.TU.scaffold_207.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|57642142|ref|YP_184620.1|1.00E-23proteasome subunit beta 2 [Thermococcus kodakarensis KOD1]
KOGKOG01796.00E-12520S proteasome, regulatory subunit beta type PSMB1/PRE7
nrgi|695002490|ref|XP_009380355.1|5.43E-146PREDICTED: proteasome subunit beta type-1-like [Musa acuminata subsp. malaccensis]
Swissprottr|O64464|PSB1_ORYSJ3.00E-141Proteasome subunit beta type-1
trEMBLtr|M0S437|M0S437_MUSAM2.00E-146Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}
TAIRAT3G608206.00E-125N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000002032724549366+
Transcript Sequence

Network for GWHGAAEX007884

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00227.25Proteasome112067.80E-32
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02732PSMB1 Proteasome map03050

Gene Ontology

GO term OntologyName
GO:0051603Biological Processproteolysis involved in cellular protein catabolic process
GO:0004175Molecular Functionendopeptidase activity
GO:0004298Molecular Functionthreonine-type endopeptidase activity
GO:0005839Cellular Componentproteasome core complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms134.480
SRR2545915Juvenile tuber136.130
SRP108465SRR5643513five period of Gastrodia elata174.160
SRR5643514five period of Gastrodia elata200.320
SRR5643515five period of Gastrodia elata179.310
SRR5643524five period of Gastrodia elata214.750
SRR5643525five period of Gastrodia elata128.220
SRR5643528five period of Gastrodia elata119.810
SRR5643658five period of Gastrodia elata121.350
SRR5643659five period of Gastrodia elata154.250
SRR5643660five period of Gastrodia elata168.960
SRR5643661five period of Gastrodia elata165.910
SRR5643662five period of Gastrodia elata144.900
SRR5643663five period of Gastrodia elata147.690
SRR5643664five period of Gastrodia elata151.840
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1109.320
SRR6049655Rhizomagastrodiae_C368-T10_good_1132.380
SRR6049656Rhizomagastrodiae_C368-T07_good_1113.100
SRR6049657Rhizomagastrodiae_C368-T07_good_1111.120
SRR6049658Rhizomagastrodiae_C368-T04_good_1130.010
SRR6049659Rhizomagastrodiae_C368-T04_good_1128.590
SRR6049660Rhizomagastrodiae_C368-T01_good_1118.820
SRR6049661Rhizomagastrodiae_C368-T04_good_1118.400
SRR6049662Rhizomagastrodiae_C368-T01_good_1135.580
SRR6049663Rhizomagastrodiae_C368-T01_good_1129.790
SRR6049664Rhizomagastrodiae_C368-T10_good_1150.510
SRR6049665Rhizomagastrodiae_C368-T10_good_1150.510
SRP279888GastroGastrodia elata tuber 198.14
JuvenJuvenile tuber212.27
Mother_GastroMother tuber of Gastrodia elata 135.43
Mother_JuvenMother tuber of Juvenile 179.03