Detail information of GWHGAAEX007896/evm.TU.scaffold_207.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|310819638|ref|YP_003951996.1| | 6.00E-101 | alpha-amylase [Stigmatella aurantiaca DW4/3-1] |
| KOG | KOG0471 | 0 | Alpha-amylase |
| nr | gi|672112936|ref|XP_008808375.1| | 0 | PREDICTED: alpha-amylase 3, chloroplastic isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q94A41|AMY3_ARATH | 0 | Alpha-amylase 3, chloroplastic (Precursor) |
| trEMBL | tr|M0TMG7|M0TMG7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P04140_001} |
| TAIR | AT1G69830_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000203 | 554716 | 577569 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007896
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00128.23 | Alpha-amylase | 548 | 832 | 5.80E-18 |
| PF07821.11 | Alpha-amyl_C2 | 853 | 910 | 4.20E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM45 |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0004556 | Molecular Function | alpha-amylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 216.290 |
| SRR2545915 | Juvenile tuber | 98.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 86.380 |
| SRR5643514 | five period of Gastrodia elata | 92.840 | |
| SRR5643515 | five period of Gastrodia elata | 92.810 | |
| SRR5643524 | five period of Gastrodia elata | 75.160 | |
| SRR5643525 | five period of Gastrodia elata | 440.090 | |
| SRR5643528 | five period of Gastrodia elata | 384.760 | |
| SRR5643658 | five period of Gastrodia elata | 683.460 | |
| SRR5643659 | five period of Gastrodia elata | 11.580 | |
| SRR5643660 | five period of Gastrodia elata | 19.150 | |
| SRR5643661 | five period of Gastrodia elata | 12.960 | |
| SRR5643662 | five period of Gastrodia elata | 41.050 | |
| SRR5643663 | five period of Gastrodia elata | 16.890 | |
| SRR5643664 | five period of Gastrodia elata | 17.850 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 84.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 39.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 78.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 198.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 399.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 556.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 186.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 324.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 114.790 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.41 |
| Juven | Juvenile tuber | 10.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 343.11 | |
| Mother_Juven | Mother tuber of Juvenile | 333.79 |