Detail information of GWHGAAEX007899/evm.TU.scaffold_207.26
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|512551236|ref|YP_008089142.1| | 1.00E-68 | Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chthonomonas calidirosea T49] |
| KOG | KOG1342 | 0 | Histone deacetylase complex, catalytic component RPD3 |
| nr | gi|743797718|ref|XP_010925053.1| | 0 | PREDICTED: histone deacetylase 19-like [Elaeis guineensis] |
| Swissprot | tr|O22446|HDA19_ARATH | 0 | Histone deacetylase 19 |
| trEMBL | tr|A0A059APE9|A0A059APE9_EUCGR | 0 | Histone deacetylase {ECO:0000256|PIRNR:PIRNR037913} |
| TAIR | AT4G38130 | 0 | histone deacetylase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000203 | 772766 | 776806 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007899
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00850.18 | Hist_deacetyl | 38 | 326 | 2.90E-83 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06067 | HDAC1_2 | Notch signaling pathway | map04330 |
| Cell cycle | map04110 | ||
| Thyroid hormone signaling pathway | map04919 | ||
| Longevity regulating pathway - multiple species | map04213 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016575 | Biological Process | histone deacetylation |
| GO:0004407 | Molecular Function | histone deacetylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.020 |
| SRR2545915 | Juvenile tuber | 33.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 66.990 |
| SRR5643514 | five period of Gastrodia elata | 64.580 | |
| SRR5643515 | five period of Gastrodia elata | 51.180 | |
| SRR5643524 | five period of Gastrodia elata | 62.320 | |
| SRR5643525 | five period of Gastrodia elata | 56.660 | |
| SRR5643528 | five period of Gastrodia elata | 87.790 | |
| SRR5643658 | five period of Gastrodia elata | 56.100 | |
| SRR5643659 | five period of Gastrodia elata | 38.750 | |
| SRR5643660 | five period of Gastrodia elata | 38.590 | |
| SRR5643661 | five period of Gastrodia elata | 36.510 | |
| SRR5643662 | five period of Gastrodia elata | 35.530 | |
| SRR5643663 | five period of Gastrodia elata | 32.480 | |
| SRR5643664 | five period of Gastrodia elata | 31.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 35.190 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 49.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 34.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 38.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.560 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 77.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 59.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 77.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 77.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 74.76 |
| Juven | Juvenile tuber | 73.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 95.49 | |
| Mother_Juven | Mother tuber of Juvenile | 122.10 |