Gene detail

Detail information of GWHGAAEX007911/evm.TU.scaffold_2072.1

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|313676084\|ref\|YP_004054080.1\|	7.00E-34	ABC transporter [Marivirga tractuosa DSM 4126]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|672192803\|ref\|XP_008775867.1\|	0	PREDICTED: pleiotropic drug resistance protein TUR2-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q8GU88\|PDR7_ORYSJ	0	Putative pleiotropic drug resistance protein 7
trEMBL	tr\|K3YPA4\|K3YPA4_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si016096m}
trEMBL	tr\|K3YPA4\|K3YPA4_SETIT	8.00E-33	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si016096m}
TAIR	AT1G15520	0	pleiotropic drug resistance 12

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00002064	15	3488	-

Transcript Sequence
>GWHTAAEX007911 ATGGCTAATGAACTTTACTCTTCTTGCAGATTTTTTAGACAGTTTTTGCTGTTCTCGTTGATCAGTCAAATGGCGTCTGGTCTTTTCCGAGTTGTGGCTGCCCTTGGCAGGAACATGACAGTGGCAAACTCTTTTGGCTCCTTTGTTTTGTTGGTTGTGTTAGTTCTCGGTGGATTCTTCATATCTCGAAAAAGCATAAAGAAGTTTTGGATATGGGGTTACTGGTCATCGCCCTTGATGTACGCTCAGAATGCTTTGTCCGCAAATGAATTTCTTGGGCACACATGGAAGAAAATTGTTGATCCAAGTATCAGCAACCAGACTTTAGGAGAGCTGTTCATTGAATCCAGAGGCTTATTTGCTGAATCGAATTGGGTTTGGATAGGTGTGATAGCATTGATCGGCTATGTTCTCGTCTTCAATGTCATATATATTGCTGCCCTCACCTTTCTGGATCCATTTGGGAAAGGTCAGGCAGTCATATCTGAGGAGGCTCTGAGTGAGAAAGAATCTAATAGAACAGGAACGGCTACCAATCTCTCATCCAGAGGAAGAAGCTCCCAAGCTTCAGAAGGTGAAATCAGCACAGAAGCTGATCCTAACAGGAAGCGTGGAATGGTTCTTCCCTTTGAACCGCTATCGTTGACATTTGACAATGTGAAGTACTCAGTGGACATGCCACCGGAAATGAAATCGCAAGGTGTTCAAGAGGATCGGCTGCTGCTGCTCAAAGGCGTCAGCGGGGCTTTCAGACCGGGGGTTCTAACGGCATTGATGGGAGTCAGTGGAGCGGGTAAGACAACCCTTATGGATGTGCTTGCGGGAAGGAAGACCGGCGGGTATATAGATGGAAACATCAGCATTTCAGGCTACCCTAAGAAGCAAGAAACATTCGCCCGAATTTCAGGTTACTGTGAGCAGAATGACATCCACTCTCCTCATGTGACCGTCTACGAATCTCTCGTCTACTCCGCGTGGCTGAGGTTGCCGTCTGAAGTGAACTCTGATTCAAGAAAGATGTTCGTCGAGGAGGTTATGGAATTAGTTGAGCTGACTCCTTTAAGAAACGCGCTGGTTGGATTGCCTGGAGTCAATGGACTGTCTACCGAACAAAGGAAGAGGCTTACAATTGCTGTTGAGCTTGTCGCCAATCCTTCCATTATCTTCATGGACGAACCAACCTCTGGATTAGATGCCCGAGCAGCAGCAATTGTCATGAGAGCCGTAAGGAACACAGTGGACACAGGCAGAACTGTCGTGTGCACGATTCATCAGCCCAGCATTGACATTTTTGAGGCATTTGATGAGCTTTTCCTAATGAAACGTGGTGGAGAGGAGATATATGTCGGTCCACTGGGGCGCAATTCTACTGAACTCATCAGATACTTTGAGGCCATAAATGGAGTAAGCAAGATAAAAGATGGTTACAATCCTGCGACATGGATGCTGGAGGTGACAAACTTGGCTCAGGAAGAAATTCTGGGGTTTAATTTCGCTGAAACATACAAGAATTCTGATCTCTTCAGGAGGAACCAAACCCTGATTAGCGAGCTAAGCACTCCGGCGCCTGGAACGAAAGATCTCTACTTCCCCACCAAATTCTCGCAGCCTTTCTTCTCCCAATGTCTCGCCTGCTTCTGGAAACAGTACAAATCCTACTGGCGCAATCCCTCCTACGGCGCCATTCGCCTCTTCTTCACTACAATAATCGCTCTCATCTTCGGCACCATCTTCTGGAGGCTCGGATCCAAAACAAACACGCGGCAGGACCTCTTCAACGCCATGGGATCGATGTACTCCGCTGTCATGTTCATCGGGGTGCAGAACTCGCAGACAGTGCAGCCTGTAGTGGACGTCGAGCGGACGGTGTTCTACAGGGAGAAAGCTGCGGGAATGTACTCACCTCTGCCTTACGCCTTCGCTCAGGTCGCCATCGAAATACCTTACACGCTCTTCCAGTCAGTTTTGTACGGGGTCTTGGTCTACAGCATGATAAATTTCGACTGGACGGTTGTCAAATTCTTCTGGTACCTCTTCTTCACATTCTGCACCTTCCTCTACTTCACCTTCTACGGAATGATGGCGGTCTCATTGACCCCCAACTCGGACATTGCCGCCGTCGTCGCAGCCGCATTTTACGCCATATGGAATCTTTTCGCAGGCTTCGTCATCCCTCGCCCTAGGATTCCGATCTGGTGGAGATGGTACTTCTGGGCGTGCCCCGTTTCTTGGACGCTGTACGGCCTCTTCGCCTCGCAGTTTGGAGATATAGAGGTGGAGATGATCGTTACGGGAATGACGGTGAAGCAGTTTATAAATCATTACTTCGGCTACAAGCACGATTTCTTGGGGGCGGTCGTCATCGCGGAAATCGGATTTCCGCTTCTCTTTGCTGTCGTCTTCGCGTTTGCGATCAAGATGCTCAACTTCCAGAGGAGGTGA

Network for GWHGAAEX007911

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01061.23	ABC2_membrane	6	91	1.60E-17
PF08370.10	PDR_assoc	96	161	6.10E-24
PF00005.26	ABC_tran	243	395	8.50E-20
PF01061.23	ABC2_membrane	541	754	1.20E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	53.610
SRP064423	SRR2545915	Juvenile tuber	100.050
SRP108465	SRR5643513	five period of Gastrodia elata	21.610
	SRR5643514	five period of Gastrodia elata	17.150
	SRR5643515	five period of Gastrodia elata	90.050
	SRR5643524	five period of Gastrodia elata	28.510
	SRR5643525	five period of Gastrodia elata	108.240
	SRR5643528	five period of Gastrodia elata	366.090
	SRR5643658	five period of Gastrodia elata	73.380
	SRR5643659	five period of Gastrodia elata	140.480
	SRR5643660	five period of Gastrodia elata	84.780
	SRR5643661	five period of Gastrodia elata	113.160
	SRR5643662	five period of Gastrodia elata	148.740
	SRR5643663	five period of Gastrodia elata	94.660
	SRR5643664	five period of Gastrodia elata	212.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	55.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	84.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.510
SRP279888	Gastro	Gastrodia elata tuber	49.06
	Juven	Juvenile tuber	27.86
	Mother_Gastro	Mother tuber of Gastrodia elata	540.08
	Mother_Juven	Mother tuber of Juvenile	974.19