Gene detail

Detail information of GWHGAAEX007920/evm.TU.scaffold_208.9

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743772242\|ref\|XP_010916425.1\|	0	PREDICTED: uncharacterized protein LOC105041244 [Elaeis guineensis]
trEMBL	tr\|M0T5M8\|M0T5M8_MUSAM	6.00E-121	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P09790_001}
TAIR	AT1G67040	5.00E-36	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000209	168076	181220	-

Transcript Sequence
>GWHTAAEX007920 GGCAGACATCTGCTGCTAGCGGCTAAAAGACACGGGCAGAAATCGCTCTCGAAGCCAAATCCCACTGCCCACGCTACCTCTTCTTTTCTTTTCGGCCTGGTGCATGTTCTGTAAACAGGCGCCTCTTCTTTGGCTACGTCACTGCTTTCTATAGCACCGAAAAAGATGAATTTTTTTCAAGAAAAGAGCGCCACTAGGTTTCAGGAGTGAGGTCGCTTTCCTCACAAGCGACGTTACCCTCGGACCCCGGCAATGCTCTCGTTTAGCTAGGGTTTTATTTATTTTCCCTCTTCCCTATCTTATGATCGTCTTTCTTCTCTTGATCTTCTGCATTGCTGTATTTTTTCTCCGGAGTGATGAGCTTGGCTGTCGCAGAGAAGCGGCCGCAGCGCCGCACTGGTGGCTGCGCCCGTATTTTCTTCCAGTTCTTAGATTGGAACCGCAAGCTCGCTAAGAAGAAGCTCTTTTCTAAGAAGCTCCTTCCCCCAGTTCGTTCCTTGAAGAGGCAGACAAAAAAGCTTTATAGTGATGATAAGATTCCCAGGGCCAAGCTTATGCTTATTGATGATGAGAACCGCGGAGGTTTTCCCAGCTACAAGAAGATGGCTGAGGGCGACGAGACACCTGGGAATGGCATGAGAGCTCCTGGGATAGTAGCTCGGCTGATGGGTTTGGATTCTATACCTGTTGGAGACCATGAAAAGCCCAGGAGAGCTTTAGATTCAGAATGCTGCAGTTACCATGATAAGAGTGGGGAGTACTCTAGGCTTGATCAGGGCTTGTGCCAGGAGGTTCCGGGGCAAGGGAAGCTTGATCCTAGGCCACTGAAGTTGCAGAAGACTGAGGGATTCTTGGAGCAGCGGTCAGCAAATGCTGCAAAGCTTGCTAGTTCTGATGCTATTCACAAAAGTGTCCTTGCCCGTTCCAGAAAGCAACAACATAAGCTAGCTTCCCCGGTAAAGACTCCAAGGCTGTTCTCAAGTGGCAACCAAGCTCTGTTAATGCAAGCCGCAACCAAGATTTTGGAGCCTGGGTTGCGAACTCGGAGTAGAAGTAGACTTGCTCTAACTTGTAATGGGATTTCAGATTCCAAAAGTGTAGGATCTGAATCTTCTGTTGAGTTGATCAGATCTAATGAGCTTCAAAATGAGCTTTTAATTGGGTCTTGCAGGAGCTGTGGTGGTACAGTTGAGTTCTCACATAATGTTTATGCCACATTGGGTTCCAGCAATGTGTCATTTCAGAACCGTGATGTTGAGAATAGCAAGGTTCATGATGGAAAAACGTCGGCTGCTGCTGTCCAAACGAAATCTGATACTAATGGTAAGGATCGAAATTCATTGGAGAGACAATGCTTAGCCAGCGATCATGTCAAAACCAAATCTCCACAGCAGATGAATCCAAAGGTTGCTTCTAAAACTAGGATTTTGAGGAGGGGCGAATTGCCAATGATTAGGGACAATGTGGCTCATGGATCTAAATTGTGTAGCAGAAGACGAATTGATAATGATGCCAATGAATTTGTGGGATCCAAGCATTTTGTAGGTGCTAAAAAGAATCTAAACTCTTCTCCTCGTTTTAAATCTGCTGTCAAGATGTCTAGCAGCAATGCAGCGAATGCCTGGGGAAGAGTTTGGGAAAAGAGTGTGGTGCATAAAGGAGGATCGGGCAGTAACTCAAAGGCAGATAATGGAACTGCGTCAAATCCCAACTTTATAAAGTCAAGAAGGTCTCAGGCTAGCGTTGGTAATAAAAAAGAATCAGTCTTGAATTTTGGTCAAGCTATTAATAGGAACCATGTAAAGAATGTACCAAAAAAGAGGGTTAATGTTGAATCTCTTAGCAGTAGAGACCCTGGTATTGTCTCTTTCACCTTTAGCTCACCGATGAAGCATAATTTTCAGTCTTTTGCAAAGGAAGCAACCTCTGGAAAAAGGCAGGACACTTTTGGTCAAGCAGAATTTTCTTTTCAACCAAAAGTTTCAGTGGTGAATGCCAATGAAAATATCATACTTTCTCCAAGCGGTAAGAATAGTTTGAGAGGGGATGAGCTGAGCAATCTTCTGGAAGAGGAGATCAGGGAGATGAATTCATTTGAACAAGCTGAAGCGGGGAATTGGGATACTTCTGGAAGAACCACTGCTTCCATTCTGAAAGAGCTGATTTCAGCTATTACTGCTAATGAATCTATATCTCAAATCATCAATAAAGAGACAGAGTCAGAGATTTCCACACCAAAAGAAAGCATCATTGACAGCTTTGCGCTGCTTTCTCTGGAGACTGCTAATGGAAATCAAAATTTTTACATCAATCAGAAGTTTCAGACAGGATCAAATTCGTTCAATGCTACATCTGTGGTCAGTGACAATGATCATCCGAGCCCCATATCAATATTTGACGCATCCTTCTCAAGTGAGACTTGCTCAGTGGGTAGTTTCAATGGCAGCTTTGACATGAAAGATATCAGCAGATTACGGATTGACTTCACAGACAAATGCAATAGAACAGAATCACTTAACCCAGTAGATTCTGATCTCCTGGACTCAGCTACCTCCTTGTTTTATAATCGAAAGATTCTGAACTTATGTGGAAGGGACTCCAGCATGCATACCATCCACTCATATGAAGGCATCTCAAAGCTCAAATTCCTTATTGAGAGCATTCTCTTCTATGATTCAGACAATACATTGCGACATACTTCTGTTCACTCCTTTCTTTCTGACATGTTAACTTCAATCTCAAATGCTTTCTTTGGGAGTATGAAGTCCTGTTTAAGCTCATCAGAATCAAATGACTATAATATACTCTTGGATTATATAATTGATTACTTGAATGAGAGCTTGGATTCAAGATTTAACAATTTCTGCTTGTCTGGATATAATAAGATGTGGGGGAAATTGCCAATGTTGTCCAGTAAGAAGCATCTGTCAGATGATATTTATGCTGAGATAGGAAGGCTGGTGGAATTGGCTGGGAAGCGTTTGGATGATCTGGCAGAGCAGGAGCTAAGCTCCTCAGCCATAAGGTGGACGATGTGCCAGGCTGAAGCTTCTTTGACCGGTATCAATGTTGAGAGAGGTATTCTTAAGGATTTGATAGATGAAATGGTTTGGGATTTGTGTAATGCAAACAAACTTTCACAATGATTTCAATTGATGAGACTACTGACTGTAGACTGTACAAATTCTGTATTGGGTGCTTTTTCCTTGGGAGATGGTTTAATTCATGTGTAGAATTGCTTCAGAGGAGAGACCCACTCTTGTTTATGAATATTTGCGATGCATTATGCTTCCTGGATTCGTCTTACTAAAGTTCTGTACCAGGTTTTGTTGCATTGATTTGAATTATTATGAAAAGCCGGTGAAAATATTTTCTACATTTGTTTCTTTATACTGAAAATTTTGAGATTCTTAGGAAGACTGCAGTGTATAGAGCACAATTTAATTATTGTGAAGACTAGCTTGATTTAATTCCAAAGACAACTAACAGCAGCA

Network for GWHGAAEX007920

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14383.5	VARLMGL	91	110	3.50E-10
PF14309.5	DUF4378	794	916	2.90E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.300
SRP064423	SRR2545915	Juvenile tuber	4.870
SRP108465	SRR5643513	five period of Gastrodia elata	5.480
	SRR5643514	five period of Gastrodia elata	6.090
	SRR5643515	five period of Gastrodia elata	4.210
	SRR5643524	five period of Gastrodia elata	5.880
	SRR5643525	five period of Gastrodia elata	12.260
	SRR5643528	five period of Gastrodia elata	12.760
	SRR5643658	five period of Gastrodia elata	13.690
	SRR5643659	five period of Gastrodia elata	1.490
	SRR5643660	five period of Gastrodia elata	0.610
	SRR5643661	five period of Gastrodia elata	1.050
	SRR5643662	five period of Gastrodia elata	0.400
	SRR5643663	five period of Gastrodia elata	0.610
	SRR5643664	five period of Gastrodia elata	0.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.770
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.380
SRP279888	Gastro	Gastrodia elata tuber	2.35
	Juven	Juvenile tuber	2.85
	Mother_Gastro	Mother tuber of Gastrodia elata	2.41
	Mother_Juven	Mother tuber of Juvenile	1.12